Variant report

Variant	rs61879279
Chromosome Location	chr11:36279714-36279715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:35639919..35641599-chr11:36279059..36281410,3	MCF-7	breast:
2	chr11:36279472..36281764-chr11:36285267..36287632,2	MCF-7	breast:
3	chr11:35638995..35641782-chr11:36276960..36279834,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179431	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11033500	0.82[EUR][1000 genomes]
rs11033501	0.82[EUR][1000 genomes]
rs11033503	0.82[EUR][1000 genomes]
rs11033504	0.82[EUR][1000 genomes]
rs11033508	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11551023	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11601619	0.82[EUR][1000 genomes]
rs11602141	0.82[EUR][1000 genomes]
rs11603025	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11603810	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11604341	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11604381	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11604397	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11605921	0.82[EUR][1000 genomes]
rs11605927	0.82[EUR][1000 genomes]
rs11605931	0.82[EUR][1000 genomes]
rs11605941	0.82[EUR][1000 genomes]
rs11606476	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11606598	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11607231	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421400	0.82[EUR][1000 genomes]
rs12574172	0.82[EUR][1000 genomes]
rs12574173	0.82[EUR][1000 genomes]
rs12575304	0.82[EUR][1000 genomes]
rs12575540	0.82[EUR][1000 genomes]
rs12577437	0.82[EUR][1000 genomes]
rs1446672	0.88[AMR][1000 genomes]
rs1526058	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1526059	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16928513	0.85[EUR][1000 genomes]
rs16928514	0.85[EUR][1000 genomes]
rs2289980	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2289981	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34213469	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34892666	0.82[EUR][1000 genomes]
rs3812769	0.85[EUR][1000 genomes]
rs3812771	0.85[EUR][1000 genomes]
rs3812772	0.85[EUR][1000 genomes]
rs4417242	0.82[EUR][1000 genomes]
rs4417243	0.82[EUR][1000 genomes]
rs4468324	0.82[EUR][1000 genomes]
rs4485080	0.82[EUR][1000 genomes]
rs4611176	0.82[EUR][1000 genomes]
rs58048041	0.82[EUR][1000 genomes]
rs58356552	0.82[EUR][1000 genomes]
rs58648806	0.82[EUR][1000 genomes]
rs58707777	0.82[EUR][1000 genomes]
rs59051429	0.82[EUR][1000 genomes]
rs59137935	0.82[EUR][1000 genomes]
rs59307065	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60008257	0.82[EUR][1000 genomes]
rs60544801	0.82[EUR][1000 genomes]
rs60759289	0.82[EUR][1000 genomes]
rs60823142	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61627540	0.80[AMR][1000 genomes]
rs61879034	0.85[EUR][1000 genomes]
rs61879035	0.85[EUR][1000 genomes]
rs61879036	0.85[EUR][1000 genomes]
rs61879037	0.83[EUR][1000 genomes]
rs61879261	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879262	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879263	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61879264	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879265	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879266	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879267	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879268	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879269	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879270	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879271	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879272	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879273	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879274	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879275	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61879277	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61879278	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61881463	0.82[EUR][1000 genomes]
rs61881464	0.82[EUR][1000 genomes]
rs61881465	0.82[EUR][1000 genomes]
rs61881468	0.82[EUR][1000 genomes]
rs61881469	0.82[EUR][1000 genomes]
rs61881470	0.82[EUR][1000 genomes]
rs61881476	0.82[EUR][1000 genomes]
rs61881477	0.82[EUR][1000 genomes]
rs61881478	0.82[EUR][1000 genomes]
rs61881481	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61881484	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61881485	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61881486	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61881487	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7110064	0.83[EUR][1000 genomes]
rs72937449	0.85[EUR][1000 genomes]
rs72937454	0.85[EUR][1000 genomes]
rs72939309	0.85[AMR][1000 genomes]
rs72941791	0.82[EUR][1000 genomes]
rs921085	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36271600-36280000	Weak transcription	Fetal Kidney	kidney
2	chr11:36275400-36280000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36275600-36279800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:36275600-36280200	Weak transcription	Fetal Brain Male	brain
5	chr11:36276600-36280200	Weak transcription	A549	lung
6	chr11:36276800-36294400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:36278200-36280000	Enhancers	NHEK	skin
8	chr11:36278200-36280200	Weak transcription	Pancreas	Pancrea
9	chr11:36278200-36281400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:36278200-36292600	Weak transcription	Esophagus	oesophagus
11	chr11:36278200-36293200	Weak transcription	Fetal Lung	lung
12	chr11:36278400-36279800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:36278400-36280400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36278400-36281400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:36278600-36281000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:36278800-36279800	Weak transcription	Brain Substantia Nigra	brain
17	chr11:36278800-36280200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:36279000-36280000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:36279000-36280000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:36279000-36280000	Weak transcription	Brain Germinal Matrix	brain
21	chr11:36279000-36280400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:36279000-36280400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:36279000-36280800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:36279000-36281000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:36279000-36283200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:36279200-36280400	Enhancers	Brain Anterior Caudate	brain
27	chr11:36279200-36280400	Enhancers	Fetal Brain Female	brain
28	chr11:36279200-36280800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:36279200-36292000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:36279200-36294800	Weak transcription	HMEC	breast
31	chr11:36279400-36280600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:36279600-36280000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:36279600-36280000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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