Variant report

Variant	rs61879277
Chromosome Location	chr11:36273952-36273953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36271948..36274405-chr11:36284607..36286187,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs11033500	0.87[EUR][1000 genomes]
rs11033501	0.87[EUR][1000 genomes]
rs11033503	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11033504	0.87[EUR][1000 genomes]
rs11033508	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11551023	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11600365	0.84[EUR][1000 genomes]
rs11601619	0.81[EUR][1000 genomes]
rs11602141	0.81[EUR][1000 genomes]
rs11603025	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11603810	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604341	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604381	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11604397	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11605921	0.87[EUR][1000 genomes]
rs11605927	0.87[EUR][1000 genomes]
rs11605931	0.87[EUR][1000 genomes]
rs11605941	0.87[EUR][1000 genomes]
rs11606476	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11606598	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11607231	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12420852	0.84[EUR][1000 genomes]
rs12421151	0.84[EUR][1000 genomes]
rs12421199	0.84[EUR][1000 genomes]
rs12421400	0.87[EUR][1000 genomes]
rs12574172	0.87[EUR][1000 genomes]
rs12574173	0.87[EUR][1000 genomes]
rs12574419	0.83[EUR][1000 genomes]
rs12575304	0.87[EUR][1000 genomes]
rs12575540	0.87[EUR][1000 genomes]
rs12577437	0.87[EUR][1000 genomes]
rs1405095	0.84[EUR][1000 genomes]
rs1446672	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1526058	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1526059	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16928513	0.83[EUR][1000 genomes]
rs16928514	0.83[EUR][1000 genomes]
rs16928552	0.84[EUR][1000 genomes]
rs2289980	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2289981	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34213469	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34892666	0.87[EUR][1000 genomes]
rs3812769	0.83[EUR][1000 genomes]
rs3812771	0.83[EUR][1000 genomes]
rs3812772	0.83[EUR][1000 genomes]
rs4417242	0.87[EUR][1000 genomes]
rs4417243	0.87[EUR][1000 genomes]
rs4468324	0.87[EUR][1000 genomes]
rs4485080	0.87[EUR][1000 genomes]
rs4611176	0.87[EUR][1000 genomes]
rs58048041	0.87[EUR][1000 genomes]
rs58356552	0.87[EUR][1000 genomes]
rs58648806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58707777	0.87[EUR][1000 genomes]
rs59051429	0.87[EUR][1000 genomes]
rs59137935	0.87[EUR][1000 genomes]
rs59307065	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60008257	0.87[EUR][1000 genomes]
rs60544801	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60759289	0.87[EUR][1000 genomes]
rs60823142	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61254236	0.84[EUR][1000 genomes]
rs61627540	0.85[AMR][1000 genomes]
rs61879034	0.83[EUR][1000 genomes]
rs61879035	0.83[EUR][1000 genomes]
rs61879036	0.83[EUR][1000 genomes]
rs61879037	0.82[EUR][1000 genomes]
rs61879038	0.84[EUR][1000 genomes]
rs61879039	0.84[EUR][1000 genomes]
rs61879040	0.84[EUR][1000 genomes]
rs61879041	0.84[EUR][1000 genomes]
rs61879261	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879262	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879263	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61879264	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879265	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879266	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879267	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879268	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879269	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879270	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879271	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879272	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879273	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879274	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61879275	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61879278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61879279	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61881463	0.87[EUR][1000 genomes]
rs61881464	0.87[EUR][1000 genomes]
rs61881465	0.87[EUR][1000 genomes]
rs61881468	0.87[EUR][1000 genomes]
rs61881469	0.87[EUR][1000 genomes]
rs61881470	0.87[EUR][1000 genomes]
rs61881476	0.87[EUR][1000 genomes]
rs61881477	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61881478	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61881481	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61881484	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61881485	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61881486	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61881487	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7110064	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72937449	0.83[EUR][1000 genomes]
rs72937454	0.83[EUR][1000 genomes]
rs72937494	0.84[EUR][1000 genomes]
rs72939309	0.89[AMR][1000 genomes]
rs72941791	0.87[EUR][1000 genomes]
rs872534	0.84[EUR][1000 genomes]
rs921085	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs940923	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
2	chr11:36266000-36274400	Weak transcription	Fetal Brain Male	brain
3	chr11:36271200-36274400	Weak transcription	HSMMtube	muscle
4	chr11:36271400-36276000	Weak transcription	NHDF-Ad	bronchial
5	chr11:36271600-36280000	Weak transcription	Fetal Kidney	kidney
6	chr11:36271800-36274400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr11:36271800-36276000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:36271800-36277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:36272000-36275600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:36272000-36276200	Weak transcription	Hela-S3	cervix
11	chr11:36272400-36274400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:36272600-36275400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:36272600-36275400	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:36272800-36274400	Weak transcription	Fetal Brain Female	brain
15	chr11:36272800-36275000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:36272800-36275400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:36272800-36275400	Enhancers	Brain Anterior Caudate	brain
18	chr11:36272800-36275600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:36272800-36275600	Enhancers	Brain Substantia Nigra	brain
20	chr11:36273000-36275400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:36273000-36275400	Enhancers	Brain Angular Gyrus	brain
22	chr11:36273000-36275400	Enhancers	Brain Hippocampus Middle	brain
23	chr11:36273000-36275600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:36273000-36275600	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:36273000-36276000	Enhancers	Brain Germinal Matrix	brain
26	chr11:36273200-36274000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:36273200-36275800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:36273800-36276600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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