Variant report

Variant	rs72939309
Chromosome Location	chr11:36255212-36255213
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11033503	0.83[AMR][1000 genomes]
rs11033504	0.81[AMR][1000 genomes]
rs11033508	0.89[AMR][1000 genomes]
rs11551023	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11603025	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11603810	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11604341	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11604381	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11604397	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11606476	0.89[AMR][1000 genomes]
rs11606598	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11607231	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1446672	0.82[AMR][1000 genomes]
rs1526058	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1526059	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2289980	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289981	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34213469	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58648806	0.83[AMR][1000 genomes]
rs59307065	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60544801	0.83[AMR][1000 genomes]
rs60823142	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61627540	0.96[AMR][1000 genomes]
rs61879261	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879262	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879263	0.89[AMR][1000 genomes]
rs61879264	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879265	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879266	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879267	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879268	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879269	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879270	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879271	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879272	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879273	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879274	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879275	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61879277	0.89[AMR][1000 genomes]
rs61879278	0.89[AMR][1000 genomes]
rs61879279	0.85[AMR][1000 genomes]
rs61881477	0.83[AMR][1000 genomes]
rs61881478	0.83[AMR][1000 genomes]
rs61881481	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61881484	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61881485	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61881486	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61881487	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs921085	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36235800-36260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:36236800-36273200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36245000-36260800	Weak transcription	Fetal Brain Male	brain
4	chr11:36245200-36261400	Weak transcription	NHEK	skin
5	chr11:36246800-36257400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:36248800-36257600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:36249000-36262800	Weak transcription	Spleen	Spleen
8	chr11:36249600-36259800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:36250200-36255600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:36250800-36257400	Weak transcription	HMEC	breast
11	chr11:36250800-36270600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:36251000-36258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:36251400-36255600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:36252000-36257200	Weak transcription	Adipose Nuclei	Adipose
15	chr11:36252200-36260800	Weak transcription	Fetal Intestine Small	intestine
16	chr11:36252200-36270600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:36252200-36277800	Weak transcription	Esophagus	oesophagus
18	chr11:36252600-36257400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:36252800-36256800	Weak transcription	Ovary	ovary
20	chr11:36253600-36257200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:36253600-36257400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:36253600-36257400	Weak transcription	NH-A	brain
23	chr11:36253600-36262000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:36253800-36270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:36254000-36257000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr11:36254000-36257800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:36254000-36258400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:36254000-36259000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:36254200-36258600	Weak transcription	Fetal Lung	lung
30	chr11:36254400-36257000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:36254400-36257000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:36254400-36257000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:36254400-36258600	Weak transcription	Fetal Kidney	kidney
34	chr11:36254400-36259400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:36254400-36262000	Weak transcription	HSMM	muscle
36	chr11:36254400-36262000	Weak transcription	HSMMtube	muscle
37	chr11:36254400-36265400	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:36254800-36260400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr11:36255000-36264600	Weak transcription	Fetal Stomach	stomach
40	chr11:36255000-36273000	Weak transcription	Brain Germinal Matrix	brain
41	chr11:36255200-36257200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:36255200-36257600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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