Variant report

Variant	rs12576124
Chromosome Location	chr11:25882552-25882553
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10834839	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834840	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834841	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834852	1.00[EUR][1000 genomes]
rs10834853	1.00[EUR][1000 genomes]
rs11028986	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029008	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029009	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029011	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12223680	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16914782	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16914903	1.00[EUR][1000 genomes]
rs2119621	0.90[ASN][1000 genomes]
rs2119622	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2349600	1.00[EUR][1000 genomes]
rs7104765	0.90[ASN][1000 genomes]
rs972983	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs984333	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv467774	chr11:25773322-25924809	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv553895	chr11:25773322-25924809	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1039469	chr11:25853822-25918864	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1045348	chr11:25858848-25921010	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25880400-25883000	Enhancers	Duodenum Mucosa	Duodenum
2	chr11:25881200-25882600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:25881200-25882800	Enhancers	Fetal Intestine Small	intestine
4	chr11:25881200-25883200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr11:25881400-25883400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:25882200-25883200	Enhancers	Fetal Brain Male	brain
7	chr11:25882200-25883200	Enhancers	Fetal Brain Female	brain
8	chr11:25882200-25883400	Enhancers	Fetal Lung	lung
9	chr11:25882200-25883800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:25882200-25883800	Enhancers	Fetal Heart	heart
11	chr11:25882400-25882800	Enhancers	Fetal Kidney	kidney
12	chr11:25882400-25883000	Enhancers	Colon Smooth Muscle	Colon
13	chr11:25882400-25883000	Enhancers	Rectal Smooth Muscle	rectum
14	chr11:25882400-25883000	Enhancers	HUVEC	blood vessel
15	chr11:25882400-25883200	Enhancers	Brain Germinal Matrix	brain
16	chr11:25882400-25883200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:25882400-25883800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:25882400-25884200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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