Variant report

Variant	rs2119622
Chromosome Location	chr11:25879667-25879668
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10834839	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10834840	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10834841	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10834852	0.87[EUR][1000 genomes]
rs10834853	0.87[EUR][1000 genomes]
rs11028986	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11029008	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11029009	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11029011	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223680	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12576124	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16914782	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16914903	0.87[EUR][1000 genomes]
rs2119621	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2349600	0.87[EUR][1000 genomes]
rs7104765	0.83[ASN][1000 genomes]
rs972983	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs984333	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760599	chr11:25186984-26159450	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1046507	chr11:25469712-26111707	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1041080	chr11:25585107-25931087	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1039190	chr11:25592509-25925352	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv540973	chr11:25592509-25925352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv467774	chr11:25773322-25924809	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv553895	chr11:25773322-25924809	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv832091	chr11:25823826-26009887	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1039469	chr11:25853822-25918864	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1045348	chr11:25858848-25921010	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv469948	chr11:25859783-26026233	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25878800-25882400	Weak transcription	HUVEC	blood vessel
2	chr11:25879600-25879800	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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