Variant report

Variant	rs12595565
Chromosome Location	chr15:73072408-73072409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:73072122-73072439	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73070867..73073438-chr15:73080121..73082937,2	K562	blood:

Variant related genes	Relation type
ADPGK-AS1	TF binding region
ADPGK	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11630852	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4776612	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs893455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73043800-73073600	Strong transcription	Fetal Thymus	thymus
2	chr15:73045000-73074200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73045200-73074200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:73048600-73075200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:73060000-73074000	Weak transcription	Stomach Mucosa	stomach
6	chr15:73060000-73075000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr15:73060200-73075200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:73060400-73073200	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:73061400-73073400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:73061400-73073600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:73061400-73075000	Weak transcription	Fetal Kidney	kidney
12	chr15:73062600-73073600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:73062800-73073800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:73062800-73074000	Weak transcription	Small Intestine	intestine
15	chr15:73065000-73072800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:73065000-73073800	Weak transcription	HMEC	breast
17	chr15:73065000-73074200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:73065200-73073800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:73065400-73074000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:73065400-73074200	Weak transcription	Brain Germinal Matrix	brain
21	chr15:73065600-73073600	Weak transcription	Brain Anterior Caudate	brain
22	chr15:73065800-73073200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr15:73066000-73073600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:73066400-73073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:73066800-73072800	Weak transcription	Fetal Lung	lung
26	chr15:73066800-73074200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:73067000-73073200	Weak transcription	Spleen	Spleen
28	chr15:73067000-73074200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr15:73067000-73075000	Weak transcription	Esophagus	oesophagus
30	chr15:73067200-73073200	Weak transcription	Gastric	stomach
31	chr15:73067200-73073400	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:73067200-73073600	Weak transcription	Brain Substantia Nigra	brain
33	chr15:73067200-73074000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr15:73067400-73072600	Weak transcription	Fetal Intestine Small	intestine
35	chr15:73067400-73072800	Weak transcription	Pancreas	Pancrea
36	chr15:73067400-73073200	Weak transcription	Thymus	Thymus
37	chr15:73067400-73073400	Weak transcription	Brain Angular Gyrus	brain
38	chr15:73067400-73073600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:73067400-73073600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr15:73067400-73073600	Weak transcription	NHLF	lung
41	chr15:73067400-73073800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr15:73067400-73073800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:73067400-73074000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:73067400-73074000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr15:73067400-73074200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:73067400-73074200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr15:73067400-73074200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:73067400-73074200	Weak transcription	Fetal Brain Male	brain
49	chr15:73067400-73074200	Weak transcription	Left Ventricle	heart
50	chr15:73067400-73074200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links