Variant report

Variant	rs893455
Chromosome Location	chr15:73077608-73077609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr15:73074942-73077820	GM12878	blood:	n/a	n/a
2	CTCF	chr15:73077540-73077690	HCPEpiC	choroid plexus:	n/a	n/a
3	EBF1	chr15:73077585-73078194	GM12878	blood:	n/a	n/a
4	CTCF	chr15:73077560-73077710	HCPEpiC	choroid plexus:	n/a	n/a
5	ESRRA	chr15:73074606-73078362	GM12878	blood:	n/a	n/a
6	EBF1	chr15:73077223-73078234	GM12878	blood:	n/a	n/a
7	RUNX3	chr15:73077518-73078233	GM12878	blood:	n/a	chr15:73077853-73077868
8	MAZ	chr15:73074762-73078225	IMR90	lung:	n/a	chr15:73077887-73077896
9	POLR2A	chr15:73074901-73077609	IMR90	lung:	n/a	n/a
10	EP300	chr15:73077432-73078143	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:73075212..73078087-chr15:73342810..73345457,4	MCF-7	breast:
2	chr15:73074691..73078350-chr15:73341676..73346479,5	MCF-7	breast:
3	chr15:73023950..73025528-chr15:73074914..73077829,2	K562	blood:

Variant related genes	Relation type
ADPGK	TF binding region
ENSG00000140463	Chromatin interaction
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11630852	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs12595565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12902880	0.85[YRI][hapmap]
rs4776612	1.00[YRI][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73076400-73077800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:73076600-73077800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:73076800-73078600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:73077000-73078000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73077000-73078000	Enhancers	Fetal Stomach	stomach
6	chr15:73077000-73078200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr15:73077000-73078200	Enhancers	Fetal Muscle Leg	muscle
8	chr15:73077000-73078400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr15:73077000-73078400	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:73077000-73078600	Enhancers	Primary hematopoietic stem cells	blood
11	chr15:73077000-73078600	Enhancers	NH-A	brain
12	chr15:73077000-73078800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:73077000-73079000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:73077000-73079600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr15:73077000-73079600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:73077000-73080600	Enhancers	HSMMtube	muscle
17	chr15:73077000-73088800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:73077200-73077800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr15:73077200-73078000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:73077200-73078200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr15:73077200-73078200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:73077200-73078200	Enhancers	Brain Anterior Caudate	brain
23	chr15:73077200-73078200	Enhancers	Fetal Brain Female	brain
24	chr15:73077200-73078200	Enhancers	Fetal Thymus	thymus
25	chr15:73077200-73078200	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr15:73077200-73078200	Enhancers	HSMM	muscle
27	chr15:73077200-73078400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:73077200-73078400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:73077200-73078400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:73077200-73078600	Enhancers	NHDF-Ad	bronchial
31	chr15:73077200-73078600	Enhancers	Osteobl	bone
32	chr15:73077200-73078800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:73077200-73079000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:73077200-73079200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr15:73077200-73079200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr15:73077200-73079400	Enhancers	Primary T cells fromperipheralblood	blood
37	chr15:73077200-73079400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:73077200-73079400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:73077200-73079600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:73077200-73079800	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr15:73077200-73079800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:73077200-73079800	Enhancers	Brain Substantia Nigra	brain
43	chr15:73077200-73080000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:73077200-73080000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr15:73077200-73080000	Enhancers	GM12878-XiMat	blood
46	chr15:73077200-73080200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:73077200-73080400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr15:73077200-73080600	Enhancers	Brain Hippocampus Middle	brain
49	chr15:73077200-73081200	Enhancers	Fetal Brain Male	brain
50	chr15:73077400-73077800	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links