Variant report

Variant	rs4776612
Chromosome Location	chr15:73047436-73047437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11072382	0.81[YRI][hapmap]
rs11630852	0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11634630	0.81[YRI][hapmap]
rs12324395	0.81[YRI][hapmap]
rs12595565	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12902880	0.81[YRI][hapmap]
rs12914333	0.81[YRI][hapmap]
rs7182789	0.81[YRI][hapmap]
rs893455	1.00[YRI][hapmap];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73002000-73054600	Weak transcription	Fetal Brain Male	brain
2	chr15:73030600-73058400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:73035800-73050600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:73041600-73047600	Weak transcription	Stomach Mucosa	stomach
5	chr15:73041600-73049800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:73041800-73049000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:73041800-73071000	Strong transcription	Liver	Liver
8	chr15:73042000-73048000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:73042200-73048800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:73042200-73049000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:73042200-73053800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:73042200-73055400	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:73042200-73056200	Strong transcription	Thymus	Thymus
14	chr15:73042200-73058600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:73042200-73058600	Strong transcription	A549	lung
16	chr15:73042400-73049000	Strong transcription	Osteobl	bone
17	chr15:73042800-73050000	Strong transcription	HSMM	muscle
18	chr15:73043200-73050400	Strong transcription	Colonic Mucosa	Colon
19	chr15:73043200-73053400	Strong transcription	GM12878-XiMat	blood
20	chr15:73043200-73053800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr15:73043400-73048400	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr15:73043400-73048600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:73043400-73049000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:73043400-73049400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:73043400-73049400	Strong transcription	Gastric	stomach
26	chr15:73043400-73050000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:73043400-73050000	Strong transcription	Brain Anterior Caudate	brain
28	chr15:73043400-73051000	Strong transcription	Esophagus	oesophagus
29	chr15:73043400-73051200	Strong transcription	Pancreas	Pancrea
30	chr15:73043400-73053600	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:73043400-73055200	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:73043400-73055800	Strong transcription	Fetal Stomach	stomach
33	chr15:73043400-73056200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:73043400-73056600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:73043400-73056600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr15:73043400-73056800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr15:73043400-73058800	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:73043400-73058800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:73043400-73059000	Strong transcription	Fetal Intestine Small	intestine
40	chr15:73043400-73059000	Strong transcription	Left Ventricle	heart
41	chr15:73043400-73059200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:73043400-73059200	Strong transcription	Fetal Intestine Large	intestine
43	chr15:73043600-73049800	Strong transcription	NHLF	lung
44	chr15:73043600-73050600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:73043800-73049200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr15:73043800-73051200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:73043800-73051200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:73043800-73053600	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr15:73043800-73057000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:73043800-73057200	Strong transcription	Sigmoid Colon	Sigmoid Colon

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