Variant report

Variant	rs12597033
Chromosome Location	chr16:59604432-59604433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10492918	0.80[EUR][1000 genomes]
rs12709032	0.86[EUR][1000 genomes]
rs1500294	0.80[EUR][1000 genomes]
rs1500295	0.80[EUR][1000 genomes]
rs1566438	0.80[EUR][1000 genomes]
rs1827203	0.80[EUR][1000 genomes]
rs2202009	0.80[EUR][1000 genomes]
rs2202010	0.80[EUR][1000 genomes]
rs2202011	0.80[EUR][1000 genomes]
rs2221183	0.80[EUR][1000 genomes]
rs28841687	0.88[EUR][1000 genomes]
rs4633709	0.80[EUR][1000 genomes]
rs6500043	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6500047	0.80[EUR][1000 genomes]
rs7198362	0.91[EUR][1000 genomes]
rs7206696	0.87[EUR][1000 genomes]
rs8054889	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs882854	0.86[EUR][1000 genomes]
rs9933491	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv572832	chr16:59578561-59756567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59603600-59604800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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