Variant report

Variant	rs1566438
Chromosome Location	chr16:59634242-59634243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10083796	0.85[EUR][1000 genomes]
rs10492918	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12597033	0.80[EUR][1000 genomes]
rs12709032	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1500294	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1500295	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1500297	0.86[EUR][1000 genomes]
rs1604120	0.81[EUR][1000 genomes]
rs1818069	0.83[EUR][1000 genomes]
rs1818071	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1827203	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2202009	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2202010	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2202011	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2221183	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28841687	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4633709	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6500043	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6500047	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7198362	0.88[EUR][1000 genomes]
rs7206696	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8046365	0.85[EUR][1000 genomes]
rs8052045	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8054889	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8063284	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8063752	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs882854	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9302715	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9302716	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9921279	0.93[EUR][1000 genomes]
rs9922699	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9926283	0.82[EUR][1000 genomes]
rs9929021	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9933491	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9934111	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9937266	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9939480	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9940831	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv572832	chr16:59578561-59756567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv827695	chr16:59617082-59700873	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59625600-59639400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:59631400-59637200	Weak transcription	NHLF	lung
3	chr16:59631800-59635200	Weak transcription	NHDF-Ad	bronchial
4	chr16:59631800-59637200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr16:59631800-59638400	Weak transcription	HSMM	muscle
6	chr16:59632000-59635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:59632000-59635200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:59634000-59634600	Enhancers	Brain Germinal Matrix	brain
9	chr16:59634000-59636400	Weak transcription	Brain Anterior Caudate	brain

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