Variant report

Variant	rs7198362
Chromosome Location	chr16:59602180-59602181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10492918	0.87[EUR][1000 genomes]
rs12597033	0.91[EUR][1000 genomes]
rs12709032	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1500294	0.87[EUR][1000 genomes]
rs1500295	0.87[EUR][1000 genomes]
rs1500297	0.80[EUR][1000 genomes]
rs1566438	0.88[EUR][1000 genomes]
rs1818071	0.81[EUR][1000 genomes]
rs1827203	0.87[EUR][1000 genomes]
rs2202009	0.87[EUR][1000 genomes]
rs2202010	0.87[EUR][1000 genomes]
rs2202011	0.87[EUR][1000 genomes]
rs2221183	0.87[EUR][1000 genomes]
rs28841687	0.95[EUR][1000 genomes]
rs4633709	0.87[EUR][1000 genomes]
rs6500043	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6500047	0.87[EUR][1000 genomes]
rs7186835	0.80[EUR][1000 genomes]
rs7190675	0.80[EUR][1000 genomes]
rs7191971	0.81[EUR][1000 genomes]
rs7192390	0.81[EUR][1000 genomes]
rs7206696	0.94[EUR][1000 genomes]
rs8052045	0.86[EUR][1000 genomes]
rs8054889	0.96[EUR][1000 genomes]
rs8056444	0.81[EUR][1000 genomes]
rs8063284	0.86[EUR][1000 genomes]
rs8063752	0.86[EUR][1000 genomes]
rs882854	0.93[EUR][1000 genomes]
rs9302715	0.86[EUR][1000 genomes]
rs9302716	0.86[EUR][1000 genomes]
rs9888768	0.80[EUR][1000 genomes]
rs9921279	0.87[EUR][1000 genomes]
rs9922699	0.86[EUR][1000 genomes]
rs9929021	0.86[EUR][1000 genomes]
rs9933491	0.87[EUR][1000 genomes]
rs9934111	0.86[EUR][1000 genomes]
rs9939480	0.86[EUR][1000 genomes]
rs9940831	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv572832	chr16:59578561-59756567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7198362	FAM54A	trans	cerebellum	SCAN
rs7198362	CES7	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59601400-59602200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr16:59601600-59602800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr16:59601800-59602600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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