Variant report

Variant	rs12616910
Chromosome Location	chr2:99362905-99362906
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99361547..99363646-chr2:99366990..99369948,2	MCF-7	breast:
2	chr2:99360967..99363379-chr2:99408314..99410102,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11123750	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12611496	0.96[ASN][1000 genomes]
rs56943554	0.81[ASN][1000 genomes]
rs57480100	0.81[ASN][1000 genomes]
rs61419135	0.81[ASN][1000 genomes]
rs61552487	0.81[ASN][1000 genomes]
rs61604726	0.81[ASN][1000 genomes]
rs72956641	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956642	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956651	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7557719	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv1002315	chr2:99361475-99368975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99348400-99367000	Weak transcription	Esophagus	oesophagus
2	chr2:99354600-99364600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr2:99354800-99364000	Weak transcription	Dnd41	blood
4	chr2:99359200-99363000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr2:99359600-99364200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:99359600-99364400	Weak transcription	Placenta	Placenta
7	chr2:99359600-99364400	Weak transcription	Spleen	Spleen
8	chr2:99359600-99367200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
10	chr2:99361200-99364200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr2:99361200-99364200	Weak transcription	Fetal Thymus	thymus
12	chr2:99361200-99365200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:99361400-99363800	Weak transcription	Adipose Nuclei	Adipose
14	chr2:99361400-99364400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:99361400-99364400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:99361400-99364400	Weak transcription	HMEC	breast
17	chr2:99361400-99365400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:99361400-99365600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
20	chr2:99361600-99364400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:99362200-99364200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:99362400-99364000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr2:99362400-99364000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr2:99362400-99364000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:99362400-99364200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr2:99362400-99365200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
28	chr2:99362600-99364200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr2:99362600-99364200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr2:99362800-99364200	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links