The 2.0 version of rSNPBase

Variant report

Variant rs57480100
Chromosome Location chr2:99382567-99382568
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:99373800-99388000 Enhancers Primary monocytes fromperipheralblood blood
2 chr2:99374600-99383000 Enhancers Primary hematopoietic stem cells short term culture blood
3 chr2:99374600-99383200 Enhancers Primary B cells from peripheral blood blood
4 chr2:99375200-99386200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr2:99375200-99386400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr2:99376800-99384600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr2:99377000-99385000 Weak transcription Spleen Spleen
8 chr2:99377000-99386400 Weak transcription Esophagus oesophagus
9 chr2:99377800-99383800 Weak transcription HUVEC blood vessel
10 chr2:99378400-99382600 Weak transcription Pancreas Pancrea
11 chr2:99378400-99383200 Weak transcription Primary T regulatory cells fromperipheralblood blood
12 chr2:99378400-99385000 Weak transcription Lung lung
13 chr2:99378400-99385000 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr2:99378400-99389400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr2:99378600-99382600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr2:99378800-99388200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr2:99379200-99382600 Weak transcription Primary T cells from cord blood blood
18 chr2:99379200-99388200 Weak transcription Brain Substantia Nigra brain
19 chr2:99379400-99382600 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr2:99379400-99385000 Weak transcription Fetal Muscle Leg muscle
21 chr2:99379400-99385200 Weak transcription Fetal Brain Male brain
22 chr2:99379400-99385200 Weak transcription Right Atrium heart
23 chr2:99379400-99386400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
24 chr2:99379400-99388400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr2:99379800-99383200 Enhancers Primary neutrophils fromperipheralblood blood
26 chr2:99379800-99384800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr2:99380200-99383600 Enhancers Primary hematopoietic stem cells blood
28 chr2:99380600-99387400 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr2:99380600-99387400 Weak transcription Adipose Nuclei Adipose
30 chr2:99380800-99383800 Enhancers Fetal Thymus thymus
31 chr2:99381000-99386200 Enhancers Monocytes-CD14+_RO01746 blood
32 chr2:99382000-99383000 Enhancers Sigmoid Colon Sigmoid Colon
33 chr2:99382000-99385000 Enhancers Primary T helper cells PMA-I stimulated --
34 chr2:99382000-99386200 Enhancers Primary T helper cells fromperipheralblood blood
35 chr2:99382000-99386800 Enhancers GM12878-XiMat blood
36 chr2:99382200-99382600 Bivalent Enhancer Primary B cells from cord blood blood
37 chr2:99382200-99382600 Enhancers HepG2 liver
38 chr2:99382200-99382800 Enhancers Rectal Mucosa Donor 29 rectum
39 chr2:99382200-99383600 Enhancers Rectal Mucosa Donor 31 rectum
40 chr2:99382200-99385400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr2:99382200-99385400 Weak transcription Fetal Muscle Trunk muscle
42 chr2:99382200-99385600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
43 chr2:99382200-99386400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
44 chr2:99382200-99386400 Enhancers Duodenum Mucosa Duodenum
45 chr2:99382400-99382600 Enhancers Small Intestine intestine
46 chr2:99382400-99382800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr2:99382400-99383800 Genic enhancers Dnd41 blood
48 chr2:99382400-99384200 Enhancers Fetal Intestine Large intestine
49 chr2:99382400-99384200 Enhancers Fetal Intestine Small intestine
50 chr2:99382400-99384800 Enhancers Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015