Variant report

Variant	rs72956651
Chromosome Location	chr2:99367272-99367273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99361547..99363646-chr2:99366990..99369948,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496331	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11123750	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12611496	0.96[ASN][1000 genomes]
rs12616910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56943554	0.81[ASN][1000 genomes]
rs57480100	0.81[ASN][1000 genomes]
rs61419135	0.81[ASN][1000 genomes]
rs61552487	0.81[ASN][1000 genomes]
rs61604726	0.81[ASN][1000 genomes]
rs72956641	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72956642	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7557719	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011278	chr2:99280928-99638376	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535835	chr2:99280928-99638376	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv1002315	chr2:99361475-99368975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99359600-99374000	Weak transcription	Aorta	Aorta
2	chr2:99361400-99374000	Weak transcription	Pancreas	Pancrea
3	chr2:99362400-99372800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:99364800-99371200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:99365000-99368200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr2:99365200-99372200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr2:99365400-99371600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:99365400-99372400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:99365600-99373600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr2:99365800-99374400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:99366000-99369800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:99366200-99372200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:99366600-99373200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr2:99367000-99367400	Enhancers	Esophagus	oesophagus
15	chr2:99367000-99367400	Enhancers	Fetal Muscle Leg	muscle
16	chr2:99367000-99370200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr2:99367200-99367400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:99367200-99367400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
19	chr2:99367200-99367400	Enhancers	Placenta	Placenta
20	chr2:99367200-99367400	Enhancers	Lung	lung
21	chr2:99367200-99370000	Weak transcription	Primary monocytes fromperipheralblood	blood

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