Variant report
| Variant | rs12618221 |
|---|---|
| Chromosome Location | chr2:167904153-167904154 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10497319 | 1.00[EUR][1000 genomes] |
| rs12612401 | 1.00[EUR][1000 genomes] |
| rs12613172 | 0.82[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs12620446 | 1.00[EUR][1000 genomes] |
| rs12621191 | 1.00[EUR][1000 genomes] |
| rs16853054 | 1.00[EUR][1000 genomes] |
| rs16853083 | 1.00[EUR][1000 genomes] |
| rs57732129 | 1.00[EUR][1000 genomes] |
| rs58783083 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs59955159 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529384 | chr2:167143465-167958752 | Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv875376 | chr2:167844513-168037489 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
