Variant report

Variant	rs12622165
Chromosome Location	chr2:58964083-58964084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10176091	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12618115	0.83[ASN][1000 genomes]
rs12619538	0.85[ASN][1000 genomes]
rs13428870	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1641155	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17049709	0.85[ASN][1000 genomes]
rs17049712	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17049722	0.87[ASN][1000 genomes]
rs17615494	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1796435	0.87[ASN][1000 genomes]
rs2540324	0.87[ASN][1000 genomes]
rs2540325	0.87[ASN][1000 genomes]
rs2708146	0.93[ASN][1000 genomes]
rs55767040	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62142340	0.83[ASN][1000 genomes]
rs62142342	0.85[ASN][1000 genomes]
rs6741951	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv528866	chr2:58955953-58975143	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58955000-58964400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr2:58962200-58965400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:58963000-58968200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:58963200-58964200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:58963400-58964200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:58963400-58964400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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