Variant report

Variant	rs17049712
Chromosome Location	chr2:58961136-58961137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176091	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12618115	0.89[ASN][1000 genomes]
rs12619538	0.84[ASN][1000 genomes]
rs12622165	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13416859	0.80[ASN][1000 genomes]
rs13428870	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1641155	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17049705	0.81[ASN][1000 genomes]
rs17049709	0.90[ASN][1000 genomes]
rs17049722	0.86[ASN][1000 genomes]
rs17615494	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1796435	0.86[ASN][1000 genomes]
rs2540324	0.86[ASN][1000 genomes]
rs2540325	0.86[ASN][1000 genomes]
rs2708146	0.99[ASN][1000 genomes]
rs55767040	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62142340	0.89[ASN][1000 genomes]
rs62142342	0.90[ASN][1000 genomes]
rs6741951	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv528866	chr2:58955953-58975143	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17049712	USP34	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58954600-58963200	Enhancers	Primary hematopoietic stem cells	blood
2	chr2:58955000-58964400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr2:58958800-58961400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:58959200-58962800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:58959800-58962600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:58960200-58961200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:58960800-58961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:58960800-58962200	Enhancers	Hela-S3	cervix
9	chr2:58960800-58963400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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