Variant report

Variant	rs55767040
Chromosome Location	chr2:58955028-58955029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10176091	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12618115	0.90[ASN][1000 genomes]
rs12619538	0.82[ASN][1000 genomes]
rs12622165	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13416859	0.81[ASN][1000 genomes]
rs13428870	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1641155	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17049705	0.82[ASN][1000 genomes]
rs17049709	0.89[ASN][1000 genomes]
rs17049712	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17049722	0.85[ASN][1000 genomes]
rs17615494	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1796435	0.85[ASN][1000 genomes]
rs2540324	0.85[ASN][1000 genomes]
rs2540325	0.85[ASN][1000 genomes]
rs2708146	0.98[ASN][1000 genomes]
rs62142340	0.90[ASN][1000 genomes]
rs62142342	0.89[ASN][1000 genomes]
rs6741951	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58948400-58955200	Weak transcription	K562	blood
2	chr2:58948400-58960000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:58953600-58958000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr2:58954200-58958600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:58954600-58963200	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:58955000-58964400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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