Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12634138	0.82[ASN][1000 genomes]
rs12634629	0.82[ASN][1000 genomes]
rs16860242	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1919015	0.97[ASN][1000 genomes]
rs2399438	0.99[ASN][1000 genomes]
rs4682121	0.99[ASN][1000 genomes]
rs4682123	0.99[ASN][1000 genomes]
rs4682446	0.99[ASN][1000 genomes]
rs58910474	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66732921	0.99[ASN][1000 genomes]
rs66948543	0.99[ASN][1000 genomes]
rs67184855	0.99[ASN][1000 genomes]
rs6770507	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6781132	0.99[ASN][1000 genomes]
rs6802964	0.95[ASN][1000 genomes]
rs72950393	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950395	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952134	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72952145	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72952147	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72952148	0.87[EUR][1000 genomes]
rs72952155	0.81[EUR][1000 genomes]
rs72952157	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634588	0.99[ASN][1000 genomes]
rs9847757	0.86[EUR][1000 genomes]
rs9864286	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112623000-112624200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:112623400-112624400	Enhancers	Primary B cells from cord blood	blood
3	chr3:112623600-112624200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:112623800-112624200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:112623800-112624800	Enhancers	Cortex derived primary cultured neurospheres	brain

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