Variant report

Variant	rs72952157
Chromosome Location	chr3:112694405-112694406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112357856..112364091-chr3:112692717..112699765,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091986	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12631307	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16860242	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755743	0.81[ASN][1000 genomes]
rs57916867	0.82[ASN][1000 genomes]
rs58910474	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59998761	0.81[ASN][1000 genomes]
rs60626674	0.82[ASN][1000 genomes]
rs6770507	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6787825	0.84[AFR][1000 genomes]
rs72950393	0.84[AMR][1000 genomes]
rs72950395	0.84[AMR][1000 genomes]
rs72952134	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952145	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72952147	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952148	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952155	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952158	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72952160	0.82[ASN][1000 genomes]
rs72952161	0.82[ASN][1000 genomes]
rs72952168	0.81[ASN][1000 genomes]
rs72952169	0.81[ASN][1000 genomes]
rs72952171	0.81[ASN][1000 genomes]
rs72952172	0.81[ASN][1000 genomes]
rs7651481	0.81[ASN][1000 genomes]
rs9847757	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9864286	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112691600-112694600	Flanking Active TSS	GM12878-XiMat	blood
2	chr3:112692200-112695400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:112692800-112695800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr3:112693000-112694800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr3:112693000-112694800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr3:112693200-112694600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr3:112693600-112694600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:112693600-112695200	Enhancers	NHEK	skin
9	chr3:112693800-112695200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:112693800-112695400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr3:112694000-112695000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:112694000-112695200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr3:112694000-112695400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:112694000-112697000	Enhancers	Primary B cells from peripheral blood	blood
15	chr3:112694200-112694600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr3:112694200-112694600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:112694200-112694600	Enhancers	Esophagus	oesophagus
18	chr3:112694200-112694800	Enhancers	Colonic Mucosa	Colon
19	chr3:112694200-112694800	Enhancers	Thymus	Thymus
20	chr3:112694200-112695000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:112694200-112695000	Enhancers	Fetal Thymus	thymus
22	chr3:112694200-112695200	Enhancers	Primary hematopoietic stem cells	blood
23	chr3:112694200-112695200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr3:112694200-112695400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr3:112694200-112696000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr3:112694200-112697600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr3:112694200-112698200	Enhancers	Primary B cells from cord blood	blood
28	chr3:112694400-112694600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:112694400-112694600	Enhancers	Adipose Nuclei	Adipose
30	chr3:112694400-112694600	Enhancers	Fetal Muscle Leg	muscle
31	chr3:112694400-112695400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:112694400-112695400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr3:112694400-112695800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:112694400-112698400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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