Variant report

Variant	rs72952148
Chromosome Location	chr3:112673855-112673856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12631307	0.87[EUR][1000 genomes]
rs16860242	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58910474	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770507	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72950393	0.83[EUR][1000 genomes]
rs72950395	0.84[EUR][1000 genomes]
rs72952134	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952145	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72952147	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72952155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952157	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952158	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9847757	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9864286	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112661200-112677000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:112665200-112677800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr3:112665600-112675400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr3:112666400-112675400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:112667400-112677600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:112670200-112674600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:112670200-112675200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:112670200-112675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr3:112670200-112676600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:112673200-112674200	ZNF genes & repeats	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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