Variant report

Variant	rs12633213
Chromosome Location	chr3:79421682-79421683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11919036	0.88[ASN][1000 genomes]
rs12487699	0.88[ASN][1000 genomes]
rs12487760	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12487773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12492191	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12496262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12497294	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12714476	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13058752	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs13063721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13072219	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs13076006	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13083179	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13090440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1387663	0.91[ASN][1000 genomes]
rs1387664	0.91[ASN][1000 genomes]
rs1489846	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1546037	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17396958	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17397244	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2311046	0.90[ASN][1000 genomes]
rs34671557	0.87[ASN][1000 genomes]
rs35709232	0.88[ASN][1000 genomes]
rs35924478	0.83[ASN][1000 genomes]
rs3934852	0.82[ASN][1000 genomes]
rs4130991	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.82[ASN][1000 genomes]
rs4234350	0.88[ASN][1000 genomes]
rs4258922	0.83[ASN][1000 genomes]
rs4284943	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4447719	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4452292	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs4510348	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4513416	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4524244	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4535190	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4550794	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs4680960	0.91[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs4680961	0.83[ASN][1000 genomes]
rs4680962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6768939	0.91[ASN][1000 genomes]
rs6770755	1.00[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap]
rs6772426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6772464	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6773975	1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap]
rs6784825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6784911	0.84[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap]
rs6798357	0.85[ASN][1000 genomes]
rs6802848	1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap]
rs6805334	1.00[CHB][hapmap]
rs6809910	0.91[ASN][1000 genomes]
rs7617893	1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap]
rs7624099	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7628757	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs7632115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7638156	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7639769	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7640053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7646230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7651370	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs7653197	1.00[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9853257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9867953	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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