Variant report

Variant	rs6784911
Chromosome Location	chr3:79412192-79412193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11919036	0.83[ASN][1000 genomes]
rs12487699	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs12487760	0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12487773	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs12492191	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs12496262	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs12497294	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs12633213	0.84[ASW][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.80[GIH][hapmap]
rs12714476	0.94[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap]
rs13058752	0.95[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13063721	0.95[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs13072219	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes]
rs13076006	0.95[CHB][hapmap]
rs13083179	0.95[CHB][hapmap]
rs13090440	0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1387663	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1387664	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1489846	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs1546037	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs17396958	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes]
rs17397244	0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2101530	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2311046	0.87[ASN][1000 genomes]
rs2871632	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34425042	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34671557	0.82[ASN][1000 genomes]
rs35709232	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4130991	0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs4234350	0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4284943	0.95[CHB][hapmap]
rs4447719	0.95[CHB][hapmap]
rs4452292	0.82[ASW][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs4510348	0.95[CHB][hapmap];0.80[JPT][hapmap]
rs4513416	0.95[CHB][hapmap]
rs4524244	0.95[CHB][hapmap]
rs4535190	0.82[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.87[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs4550794	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs4680960	0.87[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs4680962	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs6768939	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6770755	0.95[CHB][hapmap];0.84[CHD][hapmap]
rs6772426	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6772464	0.94[CHB][hapmap];1.00[YRI][hapmap]
rs6773975	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap]
rs6784825	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs6798357	0.82[ASN][1000 genomes]
rs6802848	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6805334	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6809910	0.87[ASN][1000 genomes]
rs7617893	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap]
rs7624099	0.95[CHB][hapmap]
rs7628757	0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs7632115	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs7638156	0.95[CHB][hapmap]
rs7639769	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap]
rs7640053	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs7646230	0.95[CHB][hapmap]
rs7651370	0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.81[ASN][1000 genomes]
rs7653197	0.95[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.82[ASN][1000 genomes]
rs9810404	1.00[YRI][hapmap]
rs9853257	0.95[CHB][hapmap];1.00[YRI][hapmap]
rs9867953	0.91[CHB][hapmap];0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79410200-79415400	Weak transcription	Fetal Heart	heart
2	chr3:79410600-79412400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:79411000-79417400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:79411400-79412200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:79411400-79415600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:79411600-79413000	Enhancers	Colon Smooth Muscle	Colon
7	chr3:79411800-79412200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:79411800-79412400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:79411800-79412400	Active TSS	Fetal Lung	lung
10	chr3:79411800-79412800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:79412000-79412200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:79412000-79412400	Enhancers	Osteobl	bone

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