Variant report

Variant	rs6805334
Chromosome Location	chr3:79411200-79411201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:79081752..79082476-chr3:79410956..79411574,2	MCF-7	breast:
2	chr3:79135269..79136279-chr3:79410679..79411261,3	MCF-7	breast:
3	chr3:79135076..79136114-chr3:79410411..79411762,9	MCF-7	breast:
4	chr3:79410937..79411589-chr3:79546341..79547194,2	MCF-7	breast:
5	chr3:79410891..79411542-chr3:79546444..79547075,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11919036	0.83[ASN][1000 genomes]
rs12487699	0.83[ASN][1000 genomes]
rs12487760	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12487773	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs12492191	1.00[CHB][hapmap]
rs12496262	1.00[CHB][hapmap]
rs12497294	1.00[CHB][hapmap]
rs12633213	1.00[CHB][hapmap]
rs12714476	0.94[CHB][hapmap]
rs13058752	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs13063721	1.00[CHB][hapmap]
rs13072219	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs13076006	1.00[CHB][hapmap]
rs13083179	1.00[CHB][hapmap]
rs13090440	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1387663	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1387664	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1489846	1.00[CHB][hapmap]
rs1546037	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17396958	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17397244	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2101530	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2311046	0.86[ASN][1000 genomes]
rs2871632	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34425042	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34671557	0.81[ASN][1000 genomes]
rs35709232	0.83[ASN][1000 genomes]
rs4130991	1.00[CHB][hapmap]
rs4234350	0.83[ASN][1000 genomes]
rs4284943	1.00[CHB][hapmap]
rs4447719	1.00[CHB][hapmap]
rs4452292	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4510348	1.00[CHB][hapmap]
rs4513416	1.00[CHB][hapmap]
rs4524244	1.00[CHB][hapmap]
rs4535190	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4550794	1.00[CHB][hapmap]
rs4680960	0.91[CHB][hapmap]
rs4680962	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6768939	0.87[ASN][1000 genomes]
rs6770755	1.00[CHB][hapmap]
rs6772426	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6772464	1.00[CHB][hapmap]
rs6773975	1.00[CHB][hapmap]
rs6784825	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs6784911	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6798357	0.81[ASN][1000 genomes]
rs6802848	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6809910	0.87[ASN][1000 genomes]
rs7617893	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs7624099	1.00[CHB][hapmap]
rs7628757	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs7632115	1.00[CHB][hapmap]
rs7638156	0.95[CHB][hapmap]
rs7639769	0.96[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7640053	1.00[CHB][hapmap]
rs7646230	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs7651370	1.00[CHB][hapmap];0.85[YRI][hapmap];0.81[ASN][1000 genomes]
rs7653197	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs9853257	1.00[CHB][hapmap]
rs9867953	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763281	chr3:79246361-79489765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79404000-79411200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:79404200-79411200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:79409400-79411600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:79410200-79415400	Weak transcription	Fetal Heart	heart
5	chr3:79410600-79412400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:79411000-79417400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr3:79411200-79411400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:79411200-79411400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:79411200-79411400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:79411200-79411400	Active TSS	Fetal Lung	lung
11	chr3:79411200-79411400	Enhancers	Stomach Smooth Muscle	stomach
12	chr3:79411200-79411600	Enhancers	Liver	Liver
13	chr3:79411200-79411600	Enhancers	Rectal Smooth Muscle	rectum

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