Variant report

Variant	rs12636616
Chromosome Location	chr3:160669381-160669382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1447611	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1447614	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs1447625	0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs58295120	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6785317	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6800633	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6806892	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160666400-160669400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:160666400-160669600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:160666400-160669600	Weak transcription	Left Ventricle	heart
4	chr3:160666400-160673400	Weak transcription	Right Atrium	heart
5	chr3:160667400-160696000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:160668200-160670400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr3:160668600-160669800	Weak transcription	Pancreas	Pancrea
8	chr3:160668600-160669800	Weak transcription	Psoas Muscle	Psoas
9	chr3:160668600-160670000	Weak transcription	Gastric	stomach
10	chr3:160668800-160669400	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr3:160669000-160669800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:160669000-160670600	Enhancers	Fetal Brain Male	brain
13	chr3:160669000-160672400	Enhancers	Fetal Brain Female	brain
14	chr3:160669200-160669600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:160669200-160670800	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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