Variant report

Variant	rs6806892
Chromosome Location	chr3:160615575-160615576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12636616	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12638359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12638531	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1447611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1447614	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1447625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs1447627	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34673399	0.97[ASN][1000 genomes]
rs56707676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61344153	0.97[ASN][1000 genomes]
rs61651193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6785317	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6800633	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7636214	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3391648	chr3:160602299-160620598	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160604400-160616600	Weak transcription	Psoas Muscle	Psoas
2	chr3:160611200-160619400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:160611600-160618600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:160612200-160618800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:160613000-160619000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:160614600-160616000	Enhancers	Fetal Brain Female	brain
7	chr3:160615000-160615800	Enhancers	Fetal Brain Male	brain
8	chr3:160615200-160615600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:160615200-160615800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:160615200-160615800	Enhancers	Brain Germinal Matrix	brain
11	chr3:160615200-160616600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:160615400-160616000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:160615400-160616000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr3:160615400-160616000	Enhancers	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links