Variant report

Variant	rs6800633
Chromosome Location	chr3:160630402-160630403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12636616	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12638359	0.82[ASN][1000 genomes]
rs12638531	0.85[ASN][1000 genomes]
rs1447611	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1447614	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs1447625	1.00[CHB][hapmap]
rs1447627	0.85[ASN][1000 genomes]
rs56707676	0.82[ASN][1000 genomes]
rs58295120	0.85[ASN][1000 genomes]
rs61651193	0.82[ASN][1000 genomes]
rs6785317	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs6806892	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7636214	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160630200-160641400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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