Variant report

Variant	rs1447627
Chromosome Location	chr3:160627748-160627749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12638359	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12638531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1447611	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1447614	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1447625	1.00[AMR][1000 genomes]
rs34673399	0.94[ASN][1000 genomes]
rs56707676	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58295120	0.82[ASN][1000 genomes]
rs61344153	0.94[ASN][1000 genomes]
rs61651193	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6785317	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6800633	0.85[ASN][1000 genomes]
rs6806892	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7636214	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv519474	chr3:160620205-160630267	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160621200-160629200	Weak transcription	Psoas Muscle	Psoas
2	chr3:160622000-160628800	Weak transcription	Fetal Brain Male	brain
3	chr3:160622600-160628800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:160625800-160629200	Weak transcription	Left Ventricle	heart
5	chr3:160627000-160627800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:160627400-160628000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:160627600-160627800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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