Variant report
| Variant | rs12640602 |
|---|---|
| Chromosome Location | chr4:21277631-21277632 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10006105 | 1.00[CEU][hapmap] |
| rs10018523 | 1.00[CEU][hapmap];0.90[CHB][hapmap] |
| rs10516376 | 1.00[CEU][hapmap] |
| rs10516377 | 1.00[CEU][hapmap] |
| rs11936275 | 1.00[CEU][hapmap] |
| rs11943249 | 1.00[CEU][hapmap] |
| rs11944859 | 1.00[CEU][hapmap] |
| rs11944996 | 1.00[CEU][hapmap] |
| rs12642021 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12648055 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12649359 | 0.82[CEU][hapmap] |
| rs1364834 | 1.00[CEU][hapmap] |
| rs1425333 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs1425336 | 1.00[CEU][hapmap] |
| rs16867638 | 1.00[CEU][hapmap] |
| rs16870439 | 0.82[CEU][hapmap] |
| rs16870444 | 0.82[CEU][hapmap] |
| rs16870621 | 1.00[CEU][hapmap] |
| rs16870639 | 0.82[CEU][hapmap] |
| rs16870654 | 1.00[CEU][hapmap] |
| rs16870672 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs1967398 | 1.00[CEU][hapmap] |
| rs2162081 | 1.00[CEU][hapmap] |
| rs2322881 | 1.00[CEU][hapmap] |
| rs60195094 | 0.92[EUR][1000 genomes] |
| rs6448042 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs6448043 | 1.00[CEU][hapmap];0.90[CHB][hapmap] |
| rs6821700 | 1.00[CEU][hapmap] |
| rs6823638 | 1.00[CEU][hapmap] |
| rs6832734 | 1.00[CEU][hapmap] |
| rs6839686 | 1.00[CEU][hapmap] |
| rs6839994 | 1.00[CEU][hapmap] |
| rs6858323 | 0.82[CEU][hapmap] |
| rs73249526 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs73249540 | 0.95[EUR][1000 genomes] |
| rs7669586 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9998813 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014941 | chr4:20611726-21345226 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537053 | chr4:20611726-21345226 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014062 | chr4:21270358-21479027 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
