Variant report

Variant	rs16867638
Chromosome Location	chr4:21239098-21239099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10006105	1.00[CEU][hapmap]
rs10013976	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10018523	0.88[CEU][hapmap]
rs1023721	0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1023722	0.85[JPT][hapmap]
rs10516376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10516377	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10938829	0.85[JPT][hapmap]
rs11936275	0.89[CEU][hapmap]
rs11943249	0.80[CEU][hapmap]
rs11944859	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11944996	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs12640602	1.00[CEU][hapmap]
rs12642021	0.89[CEU][hapmap]
rs12647061	0.86[EUR][1000 genomes]
rs12648055	0.88[CEU][hapmap]
rs1364834	0.89[CEU][hapmap]
rs1425333	1.00[CEU][hapmap]
rs1425334	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1425336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16870621	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16870639	0.89[CEU][hapmap]
rs16870654	0.89[CEU][hapmap]
rs16870672	0.88[CEU][hapmap]
rs1834350	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1865193	0.85[JPT][hapmap]
rs1967398	1.00[CEU][hapmap]
rs2162081	0.89[CEU][hapmap];0.90[YRI][hapmap]
rs2322881	0.80[CEU][hapmap]
rs28420737	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28655062	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4090720	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6448011	0.85[JPT][hapmap]
rs6448013	0.85[JPT][hapmap]
rs6448042	0.80[CEU][hapmap]
rs6448043	0.80[CEU][hapmap]
rs6821700	0.89[CEU][hapmap]
rs6823638	0.89[CEU][hapmap];0.85[CHB][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6824763	0.85[JPT][hapmap]
rs6832734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839686	0.89[CEU][hapmap]
rs6839994	0.89[CEU][hapmap]
rs6858323	0.80[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73247401	0.86[EUR][1000 genomes]
rs73249503	0.86[EUR][1000 genomes]
rs73249506	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73249509	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73249518	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7437801	0.85[CHB][hapmap]
rs7669586	0.80[CEU][hapmap]
rs7695878	0.85[JPT][hapmap]
rs9991408	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9998813	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002610	chr4:21192993-21261812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links