Variant report

Variant	rs1023722
Chromosome Location	chr4:21057794-21057795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10028465	0.91[ASN][1000 genomes]
rs10028561	0.92[ASN][1000 genomes]
rs10516376	0.85[JPT][hapmap]
rs10516377	0.85[JPT][hapmap]
rs10938829	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11944192	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11944859	0.85[JPT][hapmap]
rs11944996	0.85[JPT][hapmap]
rs12643360	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs12649359	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs1368640	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1425336	0.82[JPT][hapmap]
rs1560788	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1560789	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs16867638	0.85[JPT][hapmap]
rs16870359	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs16870421	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs16870439	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs16870444	1.00[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs16870511	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs16870621	0.85[JPT][hapmap]
rs1865193	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1897664	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs28396704	0.95[ASN][1000 genomes]
rs28718441	0.95[ASN][1000 genomes]
rs6448011	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6448013	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6448016	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6814358	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs6824763	0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6832734	0.85[JPT][hapmap]
rs6858323	0.85[JPT][hapmap]
rs7356370	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7667541	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7673495	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7689193	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7689340	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7695878	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7696284	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7696531	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7696822	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7696887	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs876477	0.85[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs919856	0.85[CHB][hapmap];0.95[CHD][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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