Variant report

Variant	rs7673495
Chromosome Location	chr4:21117046-21117047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10007120	0.96[ASN][1000 genomes]
rs10028465	0.81[ASN][1000 genomes]
rs10028561	0.82[ASN][1000 genomes]
rs10029228	0.96[ASN][1000 genomes]
rs1023722	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10938829	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11944192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12642991	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12643360	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12643371	0.96[ASN][1000 genomes]
rs12646516	0.96[ASN][1000 genomes]
rs12649352	0.96[ASN][1000 genomes]
rs12649359	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1368640	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1425346	0.82[ASN][1000 genomes]
rs1433493	0.96[ASN][1000 genomes]
rs1560786	0.96[ASN][1000 genomes]
rs1560788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1560789	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1560790	0.96[ASN][1000 genomes]
rs16870359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs16870421	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16870439	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16870444	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16870511	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1865193	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1897664	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2043383	0.81[CHB][hapmap]
rs28390301	0.96[ASN][1000 genomes]
rs28396704	0.84[ASN][1000 genomes]
rs28492736	0.96[ASN][1000 genomes]
rs28718441	0.84[ASN][1000 genomes]
rs2874890	0.84[YRI][hapmap]
rs55988252	0.94[ASN][1000 genomes]
rs59916150	0.93[ASN][1000 genomes]
rs61277470	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6448011	0.88[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6448013	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6448016	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6448018	0.96[ASN][1000 genomes]
rs6448019	1.00[ASN][1000 genomes]
rs6814358	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6824763	0.93[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs73245253	0.90[ASN][1000 genomes]
rs73245255	0.90[ASN][1000 genomes]
rs7356370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7356371	0.96[ASN][1000 genomes]
rs7667541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7688396	0.96[ASN][1000 genomes]
rs7689134	0.96[ASN][1000 genomes]
rs7689193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7689340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7694857	0.96[ASN][1000 genomes]
rs7695039	0.96[ASN][1000 genomes]
rs7695878	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs7696284	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7696531	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7696822	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7696887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs876477	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs919856	0.85[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv525552	chr4:21115516-21117334	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21115000-21119800	Weak transcription	Ovary	ovary
2	chr4:21115400-21119200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:21115600-21119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:21116800-21120000	Weak transcription	Rectal Smooth Muscle	rectum

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