Variant report

Variant	rs16870511
Chromosome Location	chr4:21170016-21170017
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1023721	0.92[CHB][hapmap]
rs1023722	0.85[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs10938829	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap]
rs11944192	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12642991	0.82[ASN][1000 genomes]
rs12643360	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12649359	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1368640	1.00[JPT][hapmap]
rs1425346	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1560788	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1560789	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16870359	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16870421	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16870439	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16870444	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1865193	0.82[JPT][hapmap]
rs1897664	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs55988252	0.81[ASN][1000 genomes]
rs61277470	0.82[ASN][1000 genomes]
rs6448011	0.82[JPT][hapmap]
rs6448013	0.82[JPT][hapmap]
rs6448016	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6448019	0.82[ASN][1000 genomes]
rs6814358	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6824763	0.82[JPT][hapmap]
rs73245253	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73245255	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7356370	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7667541	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7673495	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7689193	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7689340	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7695878	0.82[JPT][hapmap]
rs7696284	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7696531	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7696822	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7696887	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs876477	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv4264	chr4:21138131-21199262	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1010273	chr4:21160249-21177683	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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