Variant report

Variant	rs73245253
Chromosome Location	chr4:21137102-21137103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:20774939..20775520-chr4:21136553..21137202,2	MCF-7	breast:
2	chr4:20774749..20775678-chr4:21136384..21137379,5	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10007120	0.87[ASN][1000 genomes]
rs10029228	0.87[ASN][1000 genomes]
rs11944192	0.87[ASN][1000 genomes]
rs12642991	0.90[ASN][1000 genomes]
rs12643371	0.87[ASN][1000 genomes]
rs12646516	0.87[ASN][1000 genomes]
rs12649352	0.87[ASN][1000 genomes]
rs12649359	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1368640	0.84[ASN][1000 genomes]
rs1425346	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1433493	0.87[ASN][1000 genomes]
rs1560786	0.87[ASN][1000 genomes]
rs1560788	0.87[ASN][1000 genomes]
rs1560790	0.87[ASN][1000 genomes]
rs16870421	0.90[ASN][1000 genomes]
rs16870439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1897664	0.87[ASN][1000 genomes]
rs28390301	0.87[ASN][1000 genomes]
rs28492736	0.87[ASN][1000 genomes]
rs55988252	0.89[ASN][1000 genomes]
rs59916150	0.83[ASN][1000 genomes]
rs61277470	0.90[ASN][1000 genomes]
rs6448016	0.87[ASN][1000 genomes]
rs6448018	0.87[ASN][1000 genomes]
rs6448019	0.90[ASN][1000 genomes]
rs6814358	0.87[ASN][1000 genomes]
rs73245255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7356370	0.87[ASN][1000 genomes]
rs7356371	0.87[ASN][1000 genomes]
rs7667541	0.87[ASN][1000 genomes]
rs7673495	0.90[ASN][1000 genomes]
rs7688396	0.87[ASN][1000 genomes]
rs7689134	0.87[ASN][1000 genomes]
rs7689193	0.87[ASN][1000 genomes]
rs7689340	0.87[ASN][1000 genomes]
rs7694857	0.87[ASN][1000 genomes]
rs7695039	0.87[ASN][1000 genomes]
rs7696887	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21137000-21138800	Enhancers	HUVEC	blood vessel

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