Variant report

Variant	rs55988252
Chromosome Location	chr4:21119266-21119267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10007120	0.98[ASN][1000 genomes]
rs10029228	0.98[ASN][1000 genomes]
rs11944192	0.98[ASN][1000 genomes]
rs12642991	0.94[ASN][1000 genomes]
rs12643371	0.98[ASN][1000 genomes]
rs12646516	0.98[ASN][1000 genomes]
rs12649352	0.98[ASN][1000 genomes]
rs12649359	0.95[ASN][1000 genomes]
rs1368640	0.95[ASN][1000 genomes]
rs1425346	0.81[ASN][1000 genomes]
rs1433493	0.98[ASN][1000 genomes]
rs1560786	0.98[ASN][1000 genomes]
rs1560788	0.98[ASN][1000 genomes]
rs1560790	0.98[ASN][1000 genomes]
rs16870421	0.94[ASN][1000 genomes]
rs16870439	0.89[ASN][1000 genomes]
rs1897664	0.98[ASN][1000 genomes]
rs28390301	0.98[ASN][1000 genomes]
rs28492736	0.98[ASN][1000 genomes]
rs59916150	0.94[ASN][1000 genomes]
rs61277470	0.94[ASN][1000 genomes]
rs6448016	0.98[ASN][1000 genomes]
rs6448018	0.98[ASN][1000 genomes]
rs6448019	0.94[ASN][1000 genomes]
rs6814358	0.98[ASN][1000 genomes]
rs73245253	0.89[ASN][1000 genomes]
rs73245255	0.89[ASN][1000 genomes]
rs7356370	0.98[ASN][1000 genomes]
rs7356371	0.98[ASN][1000 genomes]
rs7667541	0.98[ASN][1000 genomes]
rs7673495	0.94[ASN][1000 genomes]
rs7688396	0.98[ASN][1000 genomes]
rs7689134	0.98[ASN][1000 genomes]
rs7689193	0.98[ASN][1000 genomes]
rs7689340	0.98[ASN][1000 genomes]
rs7694857	0.98[ASN][1000 genomes]
rs7695039	0.98[ASN][1000 genomes]
rs7696887	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21115000-21119800	Weak transcription	Ovary	ovary
2	chr4:21116800-21120000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:21119000-21120200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:21119200-21120200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr4:21119200-21120600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:21119200-21120600	Enhancers	Colon Smooth Muscle	Colon
7	chr4:21119200-21120800	Enhancers	HUES64 Cell Line	embryonic stem cell

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