Variant report

Variant	rs12643360
Chromosome Location	chr4:21115056-21115057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1023722	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10938829	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11944192	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12649359	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1368640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1560788	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1560789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs16870359	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870421	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870439	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16870444	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16870511	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1865193	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1897664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6448011	0.84[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs6448013	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs6448016	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6814358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6824763	0.95[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap]
rs7356370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs7667541	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7673495	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7689193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7689340	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7695878	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs7696284	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7696531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7696822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7696887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs876477	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs919856	0.84[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv878747	chr4:21057794-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878748	chr4:21113871-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21114600-21116000	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:21114600-21117000	Enhancers	HUVEC	blood vessel
3	chr4:21114800-21115400	Enhancers	Colon Smooth Muscle	Colon
4	chr4:21114800-21115600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:21114800-21115800	Enhancers	Fetal Lung	lung
6	chr4:21115000-21115600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:21115000-21119800	Weak transcription	Ovary	ovary

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