Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10006105	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10018523	0.88[CEU][hapmap]
rs10516376	0.89[CEU][hapmap]
rs10516377	0.89[CEU][hapmap]
rs11936275	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11943249	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12640602	0.82[CEU][hapmap]
rs12642021	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs12648055	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs1364834	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1425333	0.89[CEU][hapmap]
rs1425336	0.88[CEU][hapmap]
rs16867638	0.89[CEU][hapmap]
rs16870654	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16870672	0.88[CEU][hapmap]
rs1967398	0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2162081	0.89[ASN][1000 genomes]
rs2322881	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59556101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6821700	0.89[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap]
rs6832734	0.89[CEU][hapmap]
rs6839686	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6839994	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73249526	0.83[EUR][1000 genomes]
rs9998813	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9999019	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002610	chr4:21192993-21261812	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21260800-21261400	Enhancers	Brain Anterior Caudate	brain
2	chr4:21261000-21261600	Enhancers	Gastric	stomach
3	chr4:21261200-21261600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:21261200-21261600	Enhancers	Pancreas	Pancrea
5	chr4:21261200-21261800	Enhancers	Fetal Brain Male	brain

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