Variant report

Variant	rs1264305
Chromosome Location	chr6:30882277-30882278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:314)
CpG islands
(count:183)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:314 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30881965-30882339	IMR90	lung:	n/a	n/a
2	CHD2	chr6:30881944-30883329	K562	blood:	n/a	n/a
3	POLR2A	chr6:30882004-30882497	HepG2	liver:	n/a	n/a
4	YY1	chr6:30881752-30882940	K562	blood:	n/a	chr6:30882642-30882654
5	YY1	chr6:30881415-30882961	HepG2	liver:	n/a	chr6:30882642-30882654
6	ATF2	chr6:30881773-30882352	GM12878	blood:	n/a	n/a
7	POLR2A	chr6:30881838-30882457	Hela-S3	cervix:	n/a	n/a
8	HMGN3	chr6:30881545-30882609	K562	blood:	n/a	n/a
9	ELF1	chr6:30881753-30882694	MCF-7	breast:	n/a	chr6:30882378-30882391
10	POLR2A	chr6:30881737-30882646	HEK293	kidney:	n/a	n/a
11	POLR2A	chr6:30881767-30882479	H1-hESC	embryonic stem cell:	n/a	n/a
12	ELF1	chr6:30881383-30882520	GM12878	blood:	n/a	chr6:30882378-30882391
13	RAD21	chr6:30881723-30882365	HepG2	liver:	n/a	n/a
14	ZBTB7A	chr6:30881876-30882421	K562	blood:	n/a	n/a
15	CTCF	chr6:30881367-30884041	SK-N-SH	brain:	n/a	chr6:30883455-30883476 chr6:30883454-30883470
16	RAD21	chr6:30881669-30882295	SK-N-SH_RA	brain:	n/a	n/a
17	POLR2A	chr6:30881788-30882858	GM12891	blood:	n/a	n/a
18	REST	chr6:30881780-30882370	HepG2	liver:	n/a	n/a
19	GATA3	chr6:30881762-30882296	T-47D	breast:	n/a	n/a
20	POLR2A	chr6:30881815-30882560	GM12891	blood:	n/a	n/a
21	SIN3AK20	chr6:30881785-30882370	SK-N-SH	brain:	n/a	n/a
22	POLR2A	chr6:30881826-30882649	Hela-S3	cervix:	n/a	n/a
23	MYBL2	chr6:30881759-30882763	HepG2	liver:	n/a	n/a
24	TAL1	chr6:30882041-30883214	K562	blood:	n/a	n/a
25	POLR2A	chr6:30881501-30883780	SK-N-MC	brain:	n/a	n/a
26	POLR2A	chr6:30881802-30882958	K562	blood:	n/a	n/a
27	POLR2A	chr6:30881632-30883343	H1-hESC	embryonic stem cell:	n/a	n/a
28	SMC3	chr6:30881749-30882610	Hela-S3	cervix:	n/a	n/a
29	PML	chr6:30881748-30883158	K562	blood:	n/a	chr6:30882918-30882926
30	POLR2A	chr6:30881561-30882518	MCF-7	breast:	n/a	n/a
31	POLR2A	chr6:30881780-30882425	GM12891	blood:	n/a	n/a
32	CTCF	chr6:30882260-30882410	HCPEpiC	choroid plexus:	n/a	n/a
33	POLR2A	chr6:30881844-30883256	Raji	blood:	n/a	n/a
34	MYC	chr6:30881816-30882941	K562	blood:	n/a	n/a
35	FOXM1	chr6:30881730-30882557	GM12878	blood:	n/a	n/a
36	POLR2A	chr6:30881806-30882919	K562	blood:	n/a	n/a
37	ZBTB33	chr6:30881954-30882320	HCT-116	colon:	n/a	n/a
38	TAF1	chr6:30881784-30882298	A549	lung:	n/a	n/a
39	MXI1	chr6:30881049-30883003	SK-N-SH	brain:	n/a	n/a
40	CHD2	chr6:30881599-30882299	GM12878	blood:	n/a	n/a
41	GTF2F1	chr6:30881951-30882354	K562	blood:	n/a	n/a
42	UBTF	chr6:30881936-30882927	K562	blood:	n/a	n/a
43	NRF1	chr6:30881803-30882431	H1-hESC	embryonic stem cell:	n/a	chr6:30882016-30882027 chr6:30881990-30882001
44	IRF1	chr6:30881846-30883041	K562	blood:	n/a	chr6:30882915-30882929 chr6:30882917-30882928
45	RUNX3	chr6:30881274-30882548	GM12878	blood:	n/a	n/a
46	POLR2A	chr6:30881675-30882419	GM19099	blood:	n/a	n/a
47	MYC	chr6:30881833-30882538	HepG2	liver:	n/a	n/a
48	MAX	chr6:30881535-30882635	A549	lung:	n/a	n/a
49	YY1	chr6:30881911-30882315	SK-N-SH_RA	brain:	n/a	n/a
50	JUND	chr6:30881883-30882298	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:30882260-30882310	HCPEpiC	choroid plexus:	n/a
2	chr6:30882260-30882310	MCF-7	breast:	n/a
3	chr6:30882255-30882305	NT2-D1	testis:	n/a
4	chr6:30882260-30882310	MCF10A-Er-Src	breast:	n/a
5	chr6:30882269-30882319	GM12892	blood:	n/a
6	chr6:30882260-30882310	HRE	kidney:	n/a
7	chr6:30882255-30882305	Hela-S3	cervix:	n/a
8	chr6:30882255-30882305	GM12892	blood:	n/a
9	chr6:30882269-30882319	NT2-D1	testis:	n/a
10	chr6:30882255-30882305	GM12891	blood:	n/a
11	chr6:30882255-30882305	HRPEpiC	eye:	n/a
12	chr6:30882255-30882305	PFSK-1	brain:	n/a
13	chr6:30882260-30882310	HepG2	liver:	n/a
14	chr6:30882255-30882305	AG09319	gingival:	n/a
15	chr6:30882260-30882310	IMR90	lung:	fetal
16	chr6:30882269-30882319	SK-N-SH_RA	brain:	n/a
17	chr6:30882269-30882319	NB4	blood:	n/a
18	chr6:30882255-30882305	IMR90	lung:	fetal
19	chr6:30882255-30882305	AG09309	skin:	n/a
20	chr6:30882269-30882319	Caco-2	colon:	n/a
21	chr6:30882260-30882310	HEEpiC	esophagus:	n/a
22	chr6:30882260-30882310	GM19239	blood:	n/a
23	chr6:30882260-30882310	U87	brain:	n/a
24	chr6:30882255-30882305	SK-N-MC	brain:	n/a
25	chr6:30882269-30882319	T-47D	breast:	n/a
26	chr6:30882255-30882305	BE2_C	brain:	n/a
27	chr6:30882269-30882319	BJ	skin:	n/a
28	chr6:30882255-30882305	HEEpiC	esophagus:	n/a
29	chr6:30882255-30882305	HAEpiC	amniotic membrane:	n/a
30	chr6:30882255-30882305	HUVEC	blood vessel:	n/a
31	chr6:30882269-30882319	ProgFib	skin:	n/a
32	chr6:30882260-30882310	AG09309	skin:	n/a
33	chr6:30882255-30882305	HRE	kidney:	n/a
34	chr6:30882255-30882305	HPAEpiC	pulmonary alveolar:	n/a
35	chr6:30882260-30882310	Hela-S3	cervix:	n/a
36	chr6:30882269-30882319	CMK	blood:	n/a
37	chr6:30882255-30882305	GM19239	blood:	n/a
38	chr6:30882269-30882319	HNPCEpiC	eye:	n/a
39	chr6:30882255-30882305	T-47D	breast:	n/a
40	chr6:30882260-30882310	SK-N-MC	brain:	n/a
41	chr6:30882269-30882319	PANC-1	pancreas:	n/a
42	chr6:30882269-30882319	HCT-116	colon:	n/a
43	chr6:30882269-30882319	Hela-S3	cervix:	n/a
44	chr6:30882260-30882310	HRCEpiC	kidney:	n/a
45	chr6:30882255-30882305	U87	brain:	n/a
46	chr6:30882255-30882305	NB4	blood:	n/a
47	chr6:30882260-30882310	Caco-2	colon:	n/a
48	chr6:30882269-30882319	HRCEpiC	kidney:	n/a
49	chr6:30882269-30882319	SKMC	muscle:	n/a
50	chr6:30882269-30882319	HEEpiC	esophagus:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30847750..30851239-chr6:30880214..30883075,5	K562	blood:
2	chr6:30850549..30855941-chr6:30880357..30883667,13	MCF-7	breast:
3	chr6:30793814..30798702-chr6:30880453..30884092,5	K562	blood:
4	chr6:30682386..30686066-chr6:30878897..30882722,4	K562	blood:
5	chr6:30847750..30854588-chr6:30880214..30885422,8	K562	blood:
6	chr6:30880736..30883349-chr6:30890122..30892611,2	MCF-7	breast:
7	chr6:30881791..30882519-chr9:33025130..33025732,2	NB4	blood:
8	chr6:30882036..30883658-chr6:31081525..31084682,3	MCF-7	breast:
9	chr6:30881341..30883528-chr6:31050692..31052360,2	K562	blood:
10	chr6:30523025..30525668-chr6:30880813..30884106,3	K562	blood:
11	chr6:30881805..30883309-chr6:31050438..31053270,2	MCF-7	breast:
12	chr6:30882042..30885135-chr6:30886350..30889389,4	MCF-7	breast:
13	chr6:30850840..30855328-chr6:30877838..30882665,10	MCF-7	breast:
14	chr6:30844121..30846194-chr6:30880539..30883879,3	K562	blood:
15	chr6:30843383..30845810-chr6:30880379..30882936,3	K562	blood:
16	chr6:30709669..30712213-chr6:30880810..30882538,2	MCF-7	breast:
17	chr6:30881968..30885056-chr6:30885339..30888267,3	MCF-7	breast:
18	chr6:30854396..30859063-chr6:30880954..30884819,5	K562	blood:
19	chr6:30881341..30883550-chr6:31049543..31052360,3	K562	blood:
20	chr6:30707880..30713865-chr6:30880456..30883497,7	MCF-7	breast:
21	chr6:30709387..30712006-chr6:30881214..30883426,2	K562	blood:

No data

Variant related genes	Relation type
VARS2	TF binding region
VARS2	CpG island
ENSG00000214894	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000204590	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000086061	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000137312	Chromatin interaction
ENSG00000204540	Chromatin interaction
ENSG00000237775	Chromatin interaction
ENSG00000137074	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000222895	Chromatin interaction
ENSG00000264594	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1264297	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264298	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264299	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264301	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264303	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264307	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264309	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1264320	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1264332	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1264342	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17189763	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2074506	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2240804	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2249459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2252856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2252863	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2394856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517449	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2517457	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2517461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517463	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517466	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517468	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517573	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2517575	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2517577	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517582	0.86[EUR][1000 genomes]
rs2532920	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2532921	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2532927	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2532929	0.90[EUR][1000 genomes]
rs2532930	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532933	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2532935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2532936	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532937	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532938	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532943	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2535325	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2535326	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2535327	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2535329	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2535330	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2535331	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2535335	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2535336	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2535337	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2535339	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2844652	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2844654	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2844655	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2844658	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2844662	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2844663	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2844664	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2844698	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2844699	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2844702	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3130657	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs753726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7738138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs887381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9262288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262290	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262291	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262292	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262293	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1031677	chr6:30857542-30972865	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv525438	chr6:30864829-30933975	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1264305	HIST1H2BL	cis	parietal	SCAN
rs1264305	VARS2	cis	multi-tissue	Pritchard
rs1264305	HCG22	cis	lymphoblastoid	seeQTL
rs1264305	GRM4	cis	parietal	SCAN
rs1264305	GTF2H4///VARS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30881200-30882400	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:30881200-30882400	Active TSS	Fetal Brain Female	brain
3	chr6:30881200-30883000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr6:30881400-30882400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:30881400-30882400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:30881400-30882400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:30881400-30882400	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr6:30881400-30882400	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr6:30881400-30882600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:30881400-30882600	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr6:30881400-30882600	Active TSS	Left Ventricle	heart
12	chr6:30881400-30882600	Active TSS	Psoas Muscle	Psoas
13	chr6:30881400-30882600	Active TSS	Right Ventricle	heart
14	chr6:30881400-30882800	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:30881400-30882800	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:30881400-30882800	Active TSS	Ovary	ovary
17	chr6:30881400-30883000	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:30881400-30883600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:30881400-30884200	Active TSS	Esophagus	oesophagus
20	chr6:30881600-30882400	Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr6:30881600-30882400	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:30881600-30882400	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr6:30881600-30882400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:30881600-30882400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:30881600-30882400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:30881600-30882400	Active TSS	Primary T cells from cord blood	blood
27	chr6:30881600-30882400	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr6:30881600-30882400	Active TSS	Brain Anterior Caudate	brain
29	chr6:30881600-30882400	Active TSS	Colon Smooth Muscle	Colon
30	chr6:30881600-30882400	Active TSS	Fetal Intestine Large	intestine
31	chr6:30881600-30882400	Active TSS	Fetal Kidney	kidney
32	chr6:30881600-30882400	Active TSS	Pancreas	Pancrea
33	chr6:30881600-30882400	Active TSS	Stomach Mucosa	stomach
34	chr6:30881600-30882400	Active TSS	Spleen	Spleen
35	chr6:30881600-30882600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:30881600-30882600	Active TSS	Aorta	Aorta
37	chr6:30881600-30882600	Active TSS	Brain Angular Gyrus	brain
38	chr6:30881600-30882600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:30881600-30882600	Active TSS	Brain Substantia Nigra	brain
40	chr6:30881600-30882600	Active TSS	Colonic Mucosa	Colon
41	chr6:30881600-30882600	Active TSS	Gastric	stomach
42	chr6:30881600-30882600	Active TSS	Lung	lung
43	chr6:30881600-30882600	Active TSS	Rectal Smooth Muscle	rectum
44	chr6:30881600-30882600	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:30881600-30882600	Active TSS	A549	lung
46	chr6:30881600-30882800	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr6:30881600-30882800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr6:30881600-30882800	Flanking Active TSS	Osteobl	bone
49	chr6:30881600-30883000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr6:30881800-30882400	Active TSS	H1 Cell Line	embryonic stem cell

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