Variant report

Variant	rs1264332
Chromosome Location	chr6:30845563-30845564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CUX1	chr6:30845143-30845962	K562	blood:	n/a	n/a
2	MEF2C	chr6:30845058-30845889	GM12878	blood:	n/a	chr6:30845486-30845501 chr6:30845483-30845504
3	CTCF	chr6:30845492-30845793	T-47D	breast:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
4	POLR2A	chr6:30845401-30845844	SK-N-SH	brain:	n/a	n/a
5	CTCF	chr6:30845453-30845895	IMR90	lung:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
6	ZBTB7A	chr6:30845543-30845839	K562	blood:	n/a	chr6:30845664-30845673
7	STAT5A	chr6:30845300-30845869	GM12878	blood:	n/a	chr6:30845414-30845425 chr6:30845611-30845622
8	CTCF	chr6:30845543-30845806	NHEK	skin:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
9	NANOG	chr6:30845489-30845786	H1-hESC	embryonic stem cell:	n/a	n/a
10	ZMIZ1	chr6:30845203-30845877	K562	blood:	n/a	n/a
11	REST	chr6:30845424-30845835	K562	blood:	n/a	n/a
12	CTCF	chr6:30845560-30845710	BE2_C	brain:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
13	POLR2A	chr6:30845479-30845850	K562	blood:	n/a	n/a
14	YY1	chr6:30845438-30845883	K562	blood:	n/a	chr6:30845829-30845845
15	GATA3	chr6:30845009-30845795	T-47D	breast:	n/a	n/a
16	STAT3	chr6:30845450-30845845	MCF10A-Er-Src	breast:	n/a	chr6:30845611-30845622
17	CTCF	chr6:30845540-30845690	GM12872	blood:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
18	TAF1	chr6:30845373-30845724	GM12878	blood:	n/a	n/a
19	CTCF	chr6:30845550-30845794	GM19239	blood:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
20	CTCF	chr6:30845542-30845823	MCF-7	breast:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
21	CTCF	chr6:30845369-30845851	A549	lung:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
22	MAFK	chr6:30845166-30845852	HepG2	liver:	n/a	n/a
23	RAD21	chr6:30845458-30845794	GM12878	blood:	n/a	chr6:30845661-30845680 chr6:30845665-30845679
24	SMC3	chr6:30845430-30845869	K562	blood:	n/a	chr6:30845665-30845679
25	ZNF143	chr6:30845474-30845841	H1-hESC	embryonic stem cell:	n/a	n/a
26	IRF1	chr6:30845501-30845823	K562	blood:	n/a	chr6:30845612-30845626 chr6:30845611-30845625 chr6:30845611-30845624 chr6:30845606-30845627 chr6:30845610-30845621 chr6:30845612-30845622 chr6:30845608-30845622 chr6:30845611-30845623 chr6:30845611-30845624 chr6:30845608-30845625 chr6:30845611-30845624 chr6:30845606-30845623 chr6:30845610-30845630 chr6:30845611-30845622 chr6:30845623-30845637
27	RCOR1	chr6:30845373-30845812	Hela-S3	cervix:	n/a	n/a
28	EP300	chr6:30845492-30845763	SK-N-SH_RA	brain:	n/a	n/a
29	MAZ	chr6:30845233-30846054	K562	blood:	n/a	n/a
30	RAD21	chr6:30845419-30845875	HepG2	liver:	n/a	chr6:30845661-30845680 chr6:30845665-30845679
31	RCOR1	chr6:30845313-30845979	K562	blood:	n/a	n/a
32	CTCF	chr6:30845558-30845811	GM10266	blood:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
33	RAD21	chr6:30845204-30845933	SK-N-SH_RA	brain:	n/a	chr6:30845661-30845680 chr6:30845665-30845679
34	ATF2	chr6:30845226-30845753	GM12878	blood:	n/a	n/a
35	REST	chr6:30845385-30845961	A549	lung:	n/a	n/a
36	WRNIP1	chr6:30845195-30845966	GM12878	blood:	n/a	n/a
37	STAT3	chr6:30845344-30845840	MCF10A-Er-Src	breast:	n/a	chr6:30845414-30845425 chr6:30845611-30845622
38	CTCF	chr6:30845540-30845811	K562	blood:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
39	MTA3	chr6:30845026-30845884	GM12878	blood:	n/a	n/a
40	GTF2F1	chr6:30845422-30845777	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr6:30845560-30845710	RPTEC	kidney:	n/a	chr6:30845663-30845681 chr6:30845665-30845678 chr6:30845664-30845680
42	MYC	chr6:30845495-30845768	NB4	blood:	n/a	n/a
43	USF1	chr6:30845556-30845783	SK-N-SH_RA	brain:	n/a	n/a
44	TAF1	chr6:30845453-30845797	H1-hESC	embryonic stem cell:	n/a	n/a
45	ELF1	chr6:30845516-30845889	HepG2	liver:	n/a	n/a
46	USF1	chr6:30845500-30845740	A549	lung:	n/a	n/a
47	IKZF1	chr6:30845365-30845807	GM12878	blood:	n/a	n/a
48	ELF1	chr6:30845299-30845879	MCF-7	breast:	n/a	n/a
49	RAD21	chr6:30845087-30846022	SK-N-SH	brain:	n/a	chr6:30845661-30845680 chr6:30845665-30845679
50	BHLHE40	chr6:30845492-30845799	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:30845452..30847676-chr6:30880865..30882821,3	MCF-7	breast:
2	chr6:30795972..30797365-chr6:30845047..30846130,14	MCF-7	breast:
3	chr6:30844068..30845761-chr6:30908319..30909887,2	K562	blood:
4	chr6:30844365..30846082-chr6:30868883..30871226,2	K562	blood:
5	chr6:30844198..30846831-chr6:30855109..30857991,4	K562	blood:
6	chr6:30581875..30586807-chr6:30843879..30846748,7	K562	blood:
7	chr6:30794393..30796248-chr6:30844324..30846676,2	K562	blood:
8	chr6:30582174..30584970-chr6:30843879..30846723,2	K562	blood:
9	chr6:30646385..30647034-chr6:30845206..30845866,2	K562	blood:
10	chr6:30844233..30846807-chr6:30875461..30877284,2	MCF-7	breast:
11	chr6:30844224..30847170-chr6:30875754..30878478,2	K562	blood:
12	chr6:30794216..30799803-chr6:30838849..30846731,16	K562	blood:
13	chr6:30707945..30712505-chr6:30840794..30847673,9	K562	blood:
14	chr6:30705171..30717521-chr6:30843972..30856100,74	MCF-7	breast:
15	chr6:30845163..30847158-chr6:30883257..30885343,2	K562	blood:
16	chr6:30843383..30845810-chr6:30880379..30882936,3	K562	blood:
17	chr6:30795918..30796957-chr6:30845184..30846122,7	MCF-7	breast:
18	chr6:30704403..30722478-chr6:30842859..30858629,100	MCF-7	breast:
19	chr6:30811247..30813730-chr6:30844224..30845960,2	K562	blood:
20	chr6:30843411..30845774-chr6:30879579..30881795,2	MCF-7	breast:
21	chr6:30789751..30790416-chr6:30845226..30845781,3	K562	blood:
22	chr6:30792427..30796566-chr6:30845190..30846951,4	MCF-7	breast:
23	chr6:30795677..30797852-chr6:30845172..30846174,17	K562	blood:
24	chr6:30844121..30846194-chr6:30880539..30883879,3	K562	blood:
25	chr6:30780598..30803497-chr6:30842531..30855110,80	MCF-7	breast:
26	chr6:30789442..30790123-chr6:30845044..30846033,2	MCF-7	breast:
27	chr6:30845522..30846299-chr6:30881480..30882160,2	MCF-7	breast:

Variant related genes	Relation type
DDR1-AS1	TF binding region
DDR1	TF binding region
ENSG00000137312	Chromatin interaction
ENSG00000137411	Chromatin interaction
ENSG00000213780	Chromatin interaction
ENSG00000272273	Chromatin interaction
ENSG00000204568	Chromatin interaction
ENSG00000214894	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000137331	Chromatin interaction
ENSG00000263608	Chromatin interaction
ENSG00000204569	Chromatin interaction
ENSG00000204580	Chromatin interaction
ENSG00000168631	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1264297	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264298	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264299	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264300	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1264301	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264302	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264303	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264305	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1264307	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264309	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1264317	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1264320	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1264342	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17189763	0.94[EUR][1000 genomes]
rs2074506	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2240804	0.96[EUR][1000 genomes]
rs2249459	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2252760	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2252856	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2252863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2394856	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517449	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2517457	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2517461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517462	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517463	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517466	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517468	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517573	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517575	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2517577	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517582	0.86[EUR][1000 genomes]
rs2532920	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532921	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532927	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532928	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532929	0.90[EUR][1000 genomes]
rs2532930	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532933	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532935	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2532936	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532937	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532938	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532939	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532940	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532942	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532943	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2535325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2535326	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2535327	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2535329	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2535330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2535331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2535335	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2535336	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2535337	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2535339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844652	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2844655	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2844658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2844662	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844663	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2844664	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2844698	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2844699	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2844702	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3130657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753726	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7738138	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7756286	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs887381	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9262288	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262289	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262290	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262291	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262292	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262293	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9262294	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv884109	chr6:30824532-30872203	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv884110	chr6:30845563-30856463	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv884111	chr6:30845563-30864279	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	nsv884112	chr6:30845563-30866618	Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1264332	VARS2	cis	multi-tissue	Pritchard
rs1264332	VARSL	cis	normal skin	skin_eQTL
rs1264332	VARSL	cis	uninvolved skin	skin_eQTL
rs1264332	GTF2H4///VARS2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30842400-30846000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:30843000-30846000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:30843200-30846000	Enhancers	HMEC	breast
4	chr6:30843200-30846800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:30843400-30846000	Enhancers	Placenta	Placenta
6	chr6:30843600-30848400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:30844000-30845600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:30844000-30846000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:30844200-30846200	Enhancers	Fetal Heart	heart
10	chr6:30844200-30848600	Enhancers	Fetal Thymus	thymus
11	chr6:30844200-30850200	Weak transcription	Spleen	Spleen
12	chr6:30844400-30846400	Enhancers	Fetal Stomach	stomach
13	chr6:30844600-30846600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:30844600-30846600	Enhancers	Esophagus	oesophagus
15	chr6:30844800-30846200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:30845000-30845600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:30845000-30845800	Flanking Active TSS	NHEK	skin
18	chr6:30845000-30846000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr6:30845000-30846000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:30845000-30846000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr6:30845000-30846000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:30845000-30846000	Enhancers	Fetal Lung	lung
23	chr6:30845000-30846000	Flanking Active TSS	Hela-S3	cervix
24	chr6:30845000-30846000	Flanking Active TSS	K562	blood
25	chr6:30845000-30846200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr6:30845000-30846200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:30845000-30846800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:30845200-30845600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:30845200-30845600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:30845200-30845600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:30845200-30845600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr6:30845200-30845600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:30845200-30845600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr6:30845200-30845600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:30845200-30845600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:30845200-30845600	Active TSS	Aorta	Aorta
37	chr6:30845200-30845600	Flanking Active TSS	Liver	Liver
38	chr6:30845200-30845600	Flanking Active TSS	Brain Angular Gyrus	brain
39	chr6:30845200-30845600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:30845200-30845600	Flanking Active TSS	Brain Substantia Nigra	brain
41	chr6:30845200-30845600	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr6:30845200-30845600	Flanking Active TSS	Fetal Intestine Small	intestine
43	chr6:30845200-30845600	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr6:30845200-30845600	Flanking Active TSS	Pancreas	Pancrea
45	chr6:30845200-30845600	Flanking Active TSS	Psoas Muscle	Psoas
46	chr6:30845200-30845600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:30845200-30845600	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr6:30845200-30845600	Flanking Active TSS	Stomach Mucosa	stomach
49	chr6:30845200-30845600	Flanking Active TSS	Dnd41	blood
50	chr6:30845200-30845600	Flanking Active TSS	HSMM	muscle

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