The 2.0 version of rSNPBase

Variant report

Variant rs12644749
Chromosome Location chr4:55135771-55135772
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:55119000-55138600 Weak transcription Fetal Intestine Small intestine
2 chr4:55119400-55148000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr4:55121000-55147600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr4:55121000-55153200 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr4:55121200-55147200 Weak transcription Rectal Smooth Muscle rectum
6 chr4:55122400-55142600 Strong transcription Cortex derived primary cultured neurospheres brain
7 chr4:55124400-55140400 Weak transcription Placenta Placenta
8 chr4:55124400-55147800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
9 chr4:55124800-55138600 Weak transcription NH-A brain
10 chr4:55125400-55140600 Strong transcription Ovary ovary
11 chr4:55125800-55135800 Strong transcription Fetal Lung lung
12 chr4:55126400-55140800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr4:55127000-55138600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr4:55127800-55140600 Weak transcription Left Ventricle heart
15 chr4:55129200-55139000 Weak transcription HUES6 Cell Line embryonic stem cell
16 chr4:55129200-55142400 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr4:55129800-55136000 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr4:55130000-55139000 Weak transcription Esophagus oesophagus
19 chr4:55130000-55139000 Weak transcription Stomach Smooth Muscle stomach
20 chr4:55130200-55142800 Weak transcription Gastric stomach
21 chr4:55130200-55143000 Weak transcription Muscle Satellite Cultured Cells --
22 chr4:55130600-55142400 Weak transcription Right Ventricle heart
23 chr4:55131600-55148000 Weak transcription Duodenum Mucosa Duodenum
24 chr4:55131800-55137200 Weak transcription Spleen Spleen
25 chr4:55132200-55142200 Weak transcription Liver Liver
26 chr4:55132400-55142800 Weak transcription Adipose Nuclei Adipose
27 chr4:55133200-55143200 Strong transcription Fetal Muscle Trunk muscle
28 chr4:55133400-55143000 Weak transcription Colonic Mucosa Colon
29 chr4:55134000-55141000 Weak transcription Psoas Muscle Psoas
30 chr4:55134200-55136600 Weak transcription Fetal Kidney kidney
31 chr4:55134200-55136800 Weak transcription Fetal Adrenal Gland Adrenal Gland
32 chr4:55135000-55141400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr4:55135200-55135800 Strong transcription NHLF lung
34 chr4:55135200-55137200 Weak transcription Fetal Intestine Large intestine
35 chr4:55135200-55140000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr4:55135400-55136200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr4:55135400-55137000 Weak transcription Fetal Stomach stomach
38 chr4:55135400-55138200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr4:55135400-55138200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr4:55135600-55136800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr4:55135600-55137000 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr4:55135600-55137000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
43 chr4:55135600-55137000 Weak transcription Aorta Aorta
44 chr4:55135600-55137200 Strong transcription NHDF-Ad bronchial
45 chr4:55135600-55139800 Strong transcription Osteobl bone
46 chr4:55135600-55140400 Weak transcription Fetal Muscle Leg muscle
47 chr4:55135600-55140600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr4:55135600-55142200 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015