Variant report

Variant	rs7681399
Chromosome Location	chr4:55090886-55090887
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11133312	0.87[AFR][1000 genomes]
rs11133314	0.87[AFR][1000 genomes]
rs11133315	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12505054	0.82[AFR][1000 genomes]
rs12505491	0.81[ASN][1000 genomes]
rs12506290	0.81[ASN][1000 genomes]
rs12506783	0.89[AFR][1000 genomes]
rs12508225	0.81[ASN][1000 genomes]
rs12641563	0.81[ASN][1000 genomes]
rs12644709	0.81[ASN][1000 genomes]
rs12644749	0.81[ASN][1000 genomes]
rs1565669	0.81[ASN][1000 genomes]
rs1565670	0.81[ASN][1000 genomes]
rs17084051	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800809	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800810	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1800812	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800813	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2229307	0.81[ASN][1000 genomes]
rs2307049	0.81[ASN][1000 genomes]
rs28489067	0.80[ASN][1000 genomes]
rs28528897	0.81[ASN][1000 genomes]
rs28600756	0.81[ASN][1000 genomes]
rs4358459	0.81[ASN][1000 genomes]
rs4368668	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4398585	0.84[AFR][1000 genomes]
rs4422471	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4608869	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4635872	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864855	0.84[AFR][1000 genomes]
rs4864856	0.85[AFR][1000 genomes]
rs4864857	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864858	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864859	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864860	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864861	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4864862	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864863	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4864864	0.81[ASN][1000 genomes]
rs4864865	0.81[ASN][1000 genomes]
rs56145315	0.81[ASN][1000 genomes]
rs58435984	0.85[ASN][1000 genomes]
rs58727676	0.81[ASN][1000 genomes]
rs60806423	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60863210	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61320297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6554160	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67279506	0.81[ASN][1000 genomes]
rs67432867	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67600360	0.81[ASN][1000 genomes]
rs6831380	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6832597	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6836215	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850748	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs718454	0.86[AFR][1000 genomes]
rs718455	0.84[AFR][1000 genomes]
rs73252942	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73252946	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs73252948	0.81[ASN][1000 genomes]
rs7660560	0.81[ASN][1000 genomes]
rs7673027	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673597	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673625	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7673853	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7673984	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676972	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7677751	0.95[ASN][1000 genomes]
rs7678144	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679903	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682912	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7683707	0.85[AFR][1000 genomes]
rs7686588	0.81[ASN][1000 genomes]
rs7688997	0.81[ASN][1000 genomes]
rs7689569	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690503	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7691129	0.81[ASN][1000 genomes]
rs7698425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs890203	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9991165	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55084200-55091200	Weak transcription	Ovary	ovary
2	chr4:55084600-55091400	Weak transcription	Osteobl	bone
3	chr4:55084600-55092800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:55084800-55091400	Weak transcription	NHLF	lung
5	chr4:55086200-55091200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:55086800-55091400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:55090400-55091000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:55090600-55091200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:55090600-55091200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:55090600-55091400	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr4:55090600-55091400	Bivalent Enhancer	Fetal Stomach	stomach
12	chr4:55090800-55091000	Flanking Bivalent TSS/Enh	Fetal Lung	lung
13	chr4:55090800-55091600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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