Variant report

Variant	rs12645002
Chromosome Location	chr4:21034202-21034203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10014546	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10022535	0.83[JPT][hapmap]
rs10032561	0.95[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap]
rs10805223	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10938824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10938826	0.98[ASN][1000 genomes]
rs11935122	0.85[JPT][hapmap]
rs11944165	0.85[JPT][hapmap]
rs11945600	0.85[JPT][hapmap]
rs11945646	0.85[JPT][hapmap]
rs11945692	0.85[JPT][hapmap]
rs12233886	0.96[ASN][1000 genomes]
rs12510687	0.84[JPT][hapmap]
rs2043388	0.83[JPT][hapmap]
rs2163934	0.96[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs4574407	0.83[JPT][hapmap]
rs4599408	0.83[JPT][hapmap]
rs4615170	0.85[JPT][hapmap]
rs6810466	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs6810897	0.85[JPT][hapmap]
rs6815915	0.84[JPT][hapmap]
rs6817687	0.83[JPT][hapmap]
rs6818751	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6819439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6832569	0.85[JPT][hapmap]
rs6832607	0.83[JPT][hapmap]
rs6840528	0.83[JPT][hapmap]
rs6845231	0.83[JPT][hapmap]
rs6853609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6854888	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs6855710	0.84[JPT][hapmap]
rs6858766	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21033400-21034600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:21033400-21034600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr4:21033600-21034600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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