Variant report

Variant	rs6854888
Chromosome Location	chr4:21057559-21057560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10013055	0.83[JPT][hapmap]
rs10014546	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10022535	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10032561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10034038	0.82[JPT][hapmap]
rs10516374	0.82[JPT][hapmap]
rs10805223	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs10938824	0.95[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10938827	0.82[JPT][hapmap]
rs11935122	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11944165	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11945600	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11945646	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11945692	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12510687	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12644882	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs12644941	0.94[JPT][hapmap]
rs12645002	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12647437	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1364832	0.82[JPT][hapmap]
rs1364838	0.82[JPT][hapmap]
rs1364839	0.82[JPT][hapmap]
rs17446667	0.82[JPT][hapmap]
rs17448392	0.82[JPT][hapmap]
rs17506080	0.82[JPT][hapmap]
rs17513252	0.82[JPT][hapmap]
rs17574283	0.86[ASN][1000 genomes]
rs17636197	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs17637027	0.80[CHB][hapmap];0.88[JPT][hapmap]
rs2043387	0.94[ASN][1000 genomes]
rs2043388	0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2113966	0.82[JPT][hapmap]
rs2163933	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs2163934	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs28406534	0.94[ASN][1000 genomes]
rs4574407	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4599408	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4615170	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs55737345	0.86[ASN][1000 genomes]
rs55885656	0.88[ASN][1000 genomes]
rs56025335	0.86[ASN][1000 genomes]
rs56139613	0.87[ASN][1000 genomes]
rs56412118	0.86[ASN][1000 genomes]
rs6810466	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6810897	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6815915	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6817687	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6818751	0.91[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs6819439	0.95[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs6832569	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6832607	0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6835991	0.82[JPT][hapmap]
rs6840528	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6845231	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6845961	0.82[JPT][hapmap]
rs6853609	0.95[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6855710	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6858766	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs720852	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs720853	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs9997060	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv878745	chr4:21054348-21155716	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv878746	chr4:21054348-21169062	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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