Variant report

Variant	rs6855710
Chromosome Location	chr4:21042894-21042895
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10014546	0.94[ASN][1000 genomes]
rs10022535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10032561	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10805223	0.84[JPT][hapmap]
rs10938824	0.84[JPT][hapmap]
rs10938827	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10938831	0.84[EUR][1000 genomes]
rs11935122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11944165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11945600	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11945646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11945692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510687	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12640491	0.87[CHB][hapmap]
rs12644882	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs12644941	0.88[JPT][hapmap]
rs12645002	0.84[JPT][hapmap]
rs12647437	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs17574283	0.88[ASN][1000 genomes]
rs17636197	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs17637027	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2043387	0.97[ASN][1000 genomes]
rs2043388	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2163933	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs2163934	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs28406534	0.97[ASN][1000 genomes]
rs4574407	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4599408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4615170	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55737345	0.83[ASN][1000 genomes]
rs55885656	0.85[ASN][1000 genomes]
rs56025335	0.83[ASN][1000 genomes]
rs56139613	0.84[ASN][1000 genomes]
rs56412118	0.88[ASN][1000 genomes]
rs6810466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6810897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6815915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6817687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6818751	0.85[JPT][hapmap]
rs6819439	0.84[JPT][hapmap]
rs6832569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6832607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6840528	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6845231	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6853609	0.84[JPT][hapmap]
rs6854888	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs6858766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs720852	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs720853	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs7658908	0.84[EUR][1000 genomes]
rs9997060	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010145	chr4:20601908-21057992	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537052	chr4:20601908-21057992	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv829878	chr4:20966047-21138626	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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