Variant report

Variant	rs12647434
Chromosome Location	chr4:69994749-69994750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10006452	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10028494	0.91[ASN][1000 genomes]
rs10030066	0.86[ASN][1000 genomes]
rs11249522	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11730928	0.87[ASN][1000 genomes]
rs11931182	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11933459	0.85[EUR][1000 genomes]
rs11934762	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11936822	0.82[EUR][1000 genomes]
rs11940220	0.81[EUR][1000 genomes]
rs11940316	0.80[EUR][1000 genomes]
rs12505466	0.85[EUR][1000 genomes]
rs12506962	0.81[EUR][1000 genomes]
rs12508257	0.81[EUR][1000 genomes]
rs12512526	0.81[EUR][1000 genomes]
rs12513195	0.81[EUR][1000 genomes]
rs12642938	0.82[EUR][1000 genomes]
rs12646327	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12647681	0.81[EUR][1000 genomes]
rs12647682	0.81[EUR][1000 genomes]
rs28375964	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28712409	0.88[EUR][1000 genomes]
rs34318523	0.81[EUR][1000 genomes]
rs34386959	0.81[EUR][1000 genomes]
rs34630750	0.81[EUR][1000 genomes]
rs3924192	0.81[EUR][1000 genomes]
rs4235122	0.80[ASN][1000 genomes]
rs4257713	0.93[ASN][1000 genomes]
rs4274916	0.85[EUR][1000 genomes]
rs4293848	0.81[EUR][1000 genomes]
rs4307027	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4309908	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4314345	0.82[EUR][1000 genomes]
rs4327554	0.85[EUR][1000 genomes]
rs4337789	0.81[EUR][1000 genomes]
rs4351080	0.81[EUR][1000 genomes]
rs4356974	0.81[EUR][1000 genomes]
rs4364327	0.82[EUR][1000 genomes]
rs4371687	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4371688	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4385139	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455491	0.81[EUR][1000 genomes]
rs4458521	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4508963	0.85[EUR][1000 genomes]
rs4515232	0.82[ASN][1000 genomes]
rs4521414	0.82[EUR][1000 genomes]
rs4535394	0.84[EUR][1000 genomes]
rs4541594	0.81[EUR][1000 genomes]
rs4554144	0.81[EUR][1000 genomes]
rs4587017	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4588522	0.82[EUR][1000 genomes]
rs4629526	0.82[ASN][1000 genomes]
rs4694169	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4694177	0.81[EUR][1000 genomes]
rs4694591	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694596	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694603	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4694645	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694647	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5013211	0.81[EUR][1000 genomes]
rs55644608	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55834557	0.81[EUR][1000 genomes]
rs57102579	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57216626	0.80[EUR][1000 genomes]
rs58544196	0.81[EUR][1000 genomes]
rs59415892	0.81[EUR][1000 genomes]
rs60423649	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296942	0.81[EUR][1000 genomes]
rs62296943	0.81[EUR][1000 genomes]
rs62296944	0.81[EUR][1000 genomes]
rs6422323	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6422325	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6600866	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6600878	0.81[EUR][1000 genomes]
rs6600879	0.81[EUR][1000 genomes]
rs6600880	0.81[EUR][1000 genomes]
rs6600883	0.81[EUR][1000 genomes]
rs6600884	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6600885	0.81[EUR][1000 genomes]
rs6600886	0.81[EUR][1000 genomes]
rs6600887	0.81[EUR][1000 genomes]
rs6600888	0.81[EUR][1000 genomes]
rs6600890	0.80[EUR][1000 genomes]
rs6600891	0.81[EUR][1000 genomes]
rs6600893	0.82[EUR][1000 genomes]
rs6600895	0.85[EUR][1000 genomes]
rs6600896	0.85[EUR][1000 genomes]
rs6600897	0.85[EUR][1000 genomes]
rs6820734	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6830368	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6851282	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6851533	0.82[EUR][1000 genomes]
rs6858558	0.81[EUR][1000 genomes]
rs7375178	0.81[EUR][1000 genomes]
rs7434332	0.81[EUR][1000 genomes]
rs7437039	0.81[EUR][1000 genomes]
rs7438135	0.81[EUR][1000 genomes]
rs7438244	0.81[EUR][1000 genomes]
rs7438942	0.80[EUR][1000 genomes]
rs7439098	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7439152	0.81[EUR][1000 genomes]
rs7439326	0.81[EUR][1000 genomes]
rs7439792	0.81[EUR][1000 genomes]
rs7441750	0.80[EUR][1000 genomes]
rs7441774	0.81[EUR][1000 genomes]
rs7442453	0.81[EUR][1000 genomes]
rs7442486	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7658752	0.82[EUR][1000 genomes]
rs7662029	0.81[EUR][1000 genomes]
rs7666195	0.82[EUR][1000 genomes]
rs7668258	0.81[EUR][1000 genomes]
rs7674649	0.90[ASN][1000 genomes]
rs7678656	0.81[EUR][1000 genomes]
rs7679184	0.81[EUR][1000 genomes]
rs7681790	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685151	0.82[EUR][1000 genomes]
rs7698645	0.81[EUR][1000 genomes]
rs7698846	0.81[EUR][1000 genomes]
rs7699955	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8180330	0.82[ASN][1000 genomes]
rs9999076	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv879381	chr4:69972086-70046930	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv879382	chr4:69972086-70066719	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1806087	chr4:69975196-70276308	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69990800-69995000	Weak transcription	Gastric	stomach
2	chr4:69992200-69994800	Weak transcription	Pancreas	Pancrea

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