Variant report

Variant	rs57102579
Chromosome Location	chr4:69991194-69991195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UGT2B7-1	chr4:69990992-69992169	NONHSAT096754

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs10006452	0.83[EUR][1000 genomes]
rs10028494	0.91[ASN][1000 genomes]
rs10030066	0.86[ASN][1000 genomes]
rs11249523	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11249524	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11249526	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11249527	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11249528	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11730928	0.87[ASN][1000 genomes]
rs11931182	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11932131	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11933459	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11935886	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11936822	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11940220	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11940316	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12505466	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12506962	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12508257	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12512526	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12513195	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12642938	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12643840	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12647434	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647681	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12647682	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28375964	0.82[EUR][1000 genomes]
rs34318523	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34386959	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34630750	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34814736	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35297888	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35402056	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3924192	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4131317	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4235122	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4257713	0.93[ASN][1000 genomes]
rs4273534	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4274916	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4293848	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4309908	0.81[EUR][1000 genomes]
rs4314345	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4327554	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4337789	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4351080	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4356974	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4364327	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4371687	0.86[EUR][1000 genomes]
rs4371688	0.86[EUR][1000 genomes]
rs4385139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4443355	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4446391	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4454000	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4455491	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4458521	0.80[EUR][1000 genomes]
rs4478248	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4508963	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4515232	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4521414	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4522933	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4535394	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4540108	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4541594	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4554144	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4587017	0.81[EUR][1000 genomes]
rs4588522	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4629526	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4632729	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4640729	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4642304	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4694169	0.81[EUR][1000 genomes]
rs4694171	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4694177	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4694645	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694647	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4694668	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5013211	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55644608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55757747	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55834557	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56217918	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56388229	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57216626	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58544196	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59415892	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60423649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62296922	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296935	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296936	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296942	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62296943	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62296944	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6422323	0.81[EUR][1000 genomes]
rs6422324	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6422325	0.81[EUR][1000 genomes]
rs6600874	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6600875	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6600876	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6600877	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6600878	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600879	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600880	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600883	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600884	0.82[EUR][1000 genomes]
rs6600885	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600886	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600887	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600888	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600889	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6600890	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6600891	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6600893	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6600895	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6600896	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6600897	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6819757	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6843382	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6846298	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6851282	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6851533	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6858558	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7375178	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7434332	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7437039	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7437174	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7438135	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7438244	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7438942	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7439152	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7439326	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7439792	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7441750	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7441774	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7442453	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7657423	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7658752	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7659306	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7662029	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7663584	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7666195	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7668258	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7674649	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7674851	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7676472	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7677434	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7677611	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7678656	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7679184	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7679550	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7680709	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7681790	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685151	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7693957	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7698645	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7698846	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7699711	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7699955	0.81[EUR][1000 genomes]
rs8180330	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9999076	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv879381	chr4:69972086-70046930	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv879382	chr4:69972086-70066719	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1806087	chr4:69975196-70276308	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69989800-69991200	Enhancers	NHEK	skin
2	chr4:69989800-69991600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:69990600-69991200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:69990800-69991400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:69990800-69995000	Weak transcription	Gastric	stomach

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