Variant report

Variant	rs9999076
Chromosome Location	chr4:69981308-69981309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 181 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs10006452	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11249522	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11249523	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249524	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249526	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249527	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11249528	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11931182	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11932131	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11933459	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11934762	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11935886	0.96[ASN][1000 genomes]
rs11936822	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11940220	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11940316	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12505466	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12506962	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12508257	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12512526	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513195	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12642938	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12643840	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12646327	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12647434	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12647681	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12647682	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28375964	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28712409	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34318523	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34386959	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34630750	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34814736	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35297888	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35402056	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3924192	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4131317	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4273534	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4274916	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4292394	0.83[ASN][1000 genomes]
rs4293848	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4307027	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4309908	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4314345	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4327554	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4337789	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4351080	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4356974	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4364327	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4371687	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4371688	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4385139	0.85[EUR][1000 genomes]
rs4443355	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4446391	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4454000	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4455491	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4458521	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4478248	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4508963	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4521414	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4522933	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535394	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4540108	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4541594	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4554144	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4587017	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4588522	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4632729	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4640729	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4642304	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694169	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694171	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694177	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4694591	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4694596	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4694603	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4694645	0.85[EUR][1000 genomes]
rs4694647	0.84[EUR][1000 genomes]
rs5013211	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55644608	0.84[EUR][1000 genomes]
rs55757747	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55834557	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56217918	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56388229	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57102579	0.85[EUR][1000 genomes]
rs57216626	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58544196	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59415892	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60423649	0.84[EUR][1000 genomes]
rs62296922	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62296935	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62296936	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62296942	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62296943	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62296944	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6422323	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6422324	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6422325	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600866	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6600874	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600875	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600876	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600877	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600878	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600879	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600880	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600883	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600884	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600885	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600886	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600887	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600888	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600889	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6600890	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600891	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600893	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6600895	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6600896	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6600897	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6819757	0.87[ASN][1000 genomes]
rs6820734	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6830368	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6843382	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6846298	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6851282	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6851533	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858558	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7375178	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7434332	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7437039	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7437174	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7438135	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7438244	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7438942	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7439098	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7439152	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7439326	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7439792	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7441750	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7441774	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7442453	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7442486	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7657423	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7658752	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7659306	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7662029	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7663584	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7666195	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7668258	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7674851	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7676472	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677434	0.84[ASN][1000 genomes]
rs7677611	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678656	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7679184	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7679550	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7680709	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7681790	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7685151	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7693957	0.90[ASN][1000 genomes]
rs7698645	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7698846	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699711	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7699955	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999654	chr4:69661415-70132110	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3420586	chr4:69680878-70322918	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	nsv1067773	chr4:69718248-70715727	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	esv3468151	chr4:69718675-70322776	Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3468153	chr4:69718675-70322776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv594582	chr4:69827340-69988378	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv879379	chr4:69878929-69987249	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv594583	chr4:69928642-69988378	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv427683	chr4:69929701-70414172	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv522091	chr4:69932587-69988378	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv999858	chr4:69933262-70676525	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv1000261	chr4:69954600-70642254	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv537134	chr4:69954600-70642254	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
14	nsv879380	chr4:69961912-70046930	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv964059	chr4:69962051-69983787	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv879381	chr4:69972086-70046930	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv879382	chr4:69972086-70066719	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
18	esv1806087	chr4:69975196-70276308	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69963000-69982000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:69971400-69981400	Weak transcription	HepG2	liver
3	chr4:69980000-69981600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:69980400-69982800	Weak transcription	Liver	Liver
5	chr4:69980600-69981400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:69981200-69981600	Enhancers	Pancreas	Pancrea

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