Variant report

Variant	rs1264798
Chromosome Location	chr10:116919619-116919620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10787567	0.80[ASN][1000 genomes]
rs11197173	0.81[ASN][1000 genomes]
rs11498596	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1264750	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1264755	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264764	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1264770	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1264773	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1264775	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1264778	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1264781	0.87[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap]
rs1264797	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1264801	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1264803	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1269601	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1615076	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1889610	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2165988	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2201363	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2256563	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2587461	0.85[EUR][1000 genomes]
rs9630104	0.80[ASN][1000 genomes]
rs9630105	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116912000-116925600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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