Variant report

Variant	rs2256563
Chromosome Location	chr10:117004178-117004179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11197173	0.82[EUR][1000 genomes]
rs11498596	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12253499	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1264750	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1264755	0.85[EUR][1000 genomes]
rs1264764	1.00[CEU][hapmap];0.85[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1264770	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs1264773	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs1264781	0.87[CEU][hapmap];0.85[JPT][hapmap]
rs1264798	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1264801	0.80[EUR][1000 genomes]
rs1264803	0.80[EUR][1000 genomes]
rs1269601	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1494174	0.83[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1565833	0.84[JPT][hapmap]
rs1615076	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1889610	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap]
rs2165988	1.00[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2201363	1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2485971	0.84[JPT][hapmap]
rs2587461	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs584030	0.86[CHB][hapmap]
rs594160	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs615905	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs649292	0.82[CEU][hapmap];0.84[JPT][hapmap]
rs650060	0.82[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs9630104	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9630105	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv869279	chr10:116884639-117032437	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv868940	chr10:116933802-117032437	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116981000-117010800	Weak transcription	Aorta	Aorta
2	chr10:116997200-117049800	Weak transcription	Ovary	ovary
3	chr10:117003200-117012200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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