Variant report

Variant	rs2485971
Chromosome Location	chr10:117141509-117141510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10787567	0.92[ASN][1000 genomes]
rs10787573	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs11197173	0.93[ASN][1000 genomes]
rs11498596	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.84[ASN][1000 genomes]
rs12253499	0.86[ASN][1000 genomes]
rs1264764	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap]
rs1264770	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs1264773	0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap]
rs1494174	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1615076	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2165988	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[TSI][hapmap];0.83[ASN][1000 genomes]
rs2201363	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs2256563	0.84[JPT][hapmap]
rs2485966	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2485968	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584030	0.90[CHB][hapmap]
rs594160	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs615905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs649292	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap]
rs650060	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs671943	0.87[ASN][1000 genomes]
rs675816	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs679986	0.90[CHB][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs683117	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs703352	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9630104	0.85[ASN][1000 genomes]
rs9630105	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2485971	EIF3A	cis	parietal	SCAN
rs2485971	TRUB1	cis	cerebellum	SCAN
rs2485971	TRUB1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117138200-117150800	Weak transcription	Aorta	Aorta

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